PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009137435.1
Common NameWRKY7
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 348aa    MW: 38020.1 Da    PI: 10.4233
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009137435.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.9e-31279337259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d  ++++tYeg+Hnh 
  XP_009137435.1 279 SDEFSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERAPDDAMMLIVTYEGDHNHA 337
                     69************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.5E-15242276IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.808.4E-33266338IPR003657WRKY domain
PROSITE profilePS5081129.895273339IPR003657WRKY domain
SuperFamilySSF1182909.42E-26276337IPR003657WRKY domain
SMARTSM007741.2E-37278338IPR003657WRKY domain
PfamPF031061.7E-26280336IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MTVELIMSSS SSYGGGKVKR EEDGGFPAEK GDTALKEAAS AGIHGVQEFL KLIGQSQPTE  60
EKQTEITAVT DVAVNSFKKV ISLLGRSRTG HARFRRGPVT TTKPEEVVVK TEEKPGTKTT  120
TTVVLNREKT EKHGGSAFRV YCPTPIHRRP PLSHAHHTQT KYGSSSSAPL LPNGKPHQEP  180
PSSTIHFAPS PPVSAANSFM SSHRCETESN QMSSGFEFTN PSSQFSGSRG KPPLSSASLK  240
RKCSSTPSGR CHCTKKRKSK VKRVIRVPAV SSKMADIPSD EFSWRKYGQK PIKGSPHPRG  300
YYKCSSMRGC PARKHVERAP DDAMMLIVTY EGDHNHAMVL QTPHEKTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-22266338273WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239257KRKCSSTPSGRCHCTKKRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009137435.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300300.0KF430030.1 Brassica rapa WRKY transcription factor 7 (WRKY7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288974.10.0probable WRKY transcription factor 7
SwissprotQ9STX01e-172WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLM4DRU60.0M4DRU6_BRARP; Uncharacterized protein
TrEMBLV5RF670.0V5RF67_BRACM; WRKY transcription factor 7
STRINGBra019239.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-156WRKY DNA-binding protein 7
Publications ? help Back to Top
  1. Tang J, et al.
    Characterization and co-expression analysis of WRKY orthologs involved in responses to multiple abiotic stresses in Pak-choi (Brassica campestris ssp. chinensis).
    BMC Plant Biol., 2013. 13: p. 188
    [PMID:24267479]