PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009137416.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 343aa MW: 37272.9 Da PI: 7.7985

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009137416.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.4	1.7e-39	51	111	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++a++cprC+stntkfCyynnysl+qPr+fCk+CrryWt+GG+lrn+PvGgg+rknk+s+ XP_009137416.1 51 KDQAINCPRCNSTNTKFCYYNNYSLTQPRFFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSH 111 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-26	43	100	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.5E-33	52	109	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.537	55	109	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	57	93	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MDTAQWPQEI VVKPLEEIVT NTCPKPQPSQ PQEPTPDGAA GGVERKARPE KDQAINCPRC 60 NSTNTKFCYY NNYSLTQPRF FCKGCRRYWT EGGSLRNIPV GGGSRKNKRS HSSSISSSDI 120 GNNHSVSTQP ATKKHRSDQH HHHLMSMSQQ GLTGQNPKFL ETTQQDLNLG FPPPHGLIRT 180 NFTDLIHNIG NNNKSTNNLL LSSSCSATSA MATSPLDFIR NNNSNNGNSS FMGFPVHNQD 240 PTSGGFSMQD HYKPCNSNTT LLGFSLDHHR NNDFPGGFQG GEGGDDVNGR PLFPFEDLKL 300 PVSSSSATSN VDINDHQKQA SGGDAAATSG GYWTGMLSGG SWC

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MDTAQWPQEI VVKPLEEIVT NTCPKPQPSQ PQEPTPDGAA GGVERKARPE KDQAINCPRC  60
NSTNTKFCYY NNYSLTQPRF FCKGCRRYWT EGGSLRNIPV GGGSRKNKRS HSSSISSSDI  120
GNNHSVSTQP ATKKHRSDQH HHHLMSMSQQ GLTGQNPKFL ETTQQDLNLG FPPPHGLIRT  180
NFTDLIHNIG NNNKSTNNLL LSSSCSATSA MATSPLDFIR NNNSNNGNSS FMGFPVHNQD  240
PTSGGFSMQD HYKPCNSNTT LLGFSLDHHR NNDFPGGFQG GEGGDDVNGR PLFPFEDLKL  300
PVSSSSATSN VDINDHQKQA SGGDAAATSG GYWTGMLSGG SWC

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed at preprocambial stages first in wide domains, and later confined to sites of vein development. {ECO:0000269\|PubMed:20563990}.
Uniprot	TISSUE SPECIFICITY: Accumulates in the stele. {ECO:0000269\|PubMed:20563990}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009137416.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK317153	0.0	AK317153.1 Arabidopsis thaliana AT4G24060 mRNA, complete cds, clone: RAFL21-94-L04.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009137416.1	0.0	PREDICTED: dof zinc finger protein DOF4.6-like
Refseq	XP_022570837.1	0.0	dof zinc finger protein DOF4.6-like
Swissprot	Q8LAP8	1e-171	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A397L765	0.0	A0A397L765_BRACM; Uncharacterized protein
TrEMBL	M4DRV4	0.0	M4DRV4_BRARP; Uncharacterized protein
STRING	Bra019247.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3433	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-140	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]