PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009137389.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 310aa MW: 34493.4 Da PI: 5.2869 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.7 | 6.8e-19 | 119 | 169 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g+W+AeIrdp r r +lg+f taeeAa ++ a+ +l+g XP_009137389.1 119 KKYRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTFNTAEEAALVYDSAAIQLRG 169 59********.**********72....45*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.51E-32 | 119 | 176 | No hit | No description |
Pfam | PF00847 | 2.0E-12 | 120 | 169 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-30 | 120 | 177 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-21 | 120 | 178 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.907 | 120 | 177 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-37 | 120 | 183 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 121 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 143 | 159 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MEPEKNLVLP PNIKFTEHKT NTTRTVPGFN NHHLQHPRII RISVTDPDAT DSSSDDDEEE 60 ETHQRFASKR RRIKKFVNEV VLDSGAASTG SSTQIEPKRR RRKRAVIVKP EPASAPPEKK 120 YRGVRQRPWG KWAAEIRDPL RRVRLWLGTF NTAEEAALVY DSAAIQLRGP DALTNFSVPP 180 PSPVEKKAKI KDDVASSSTS SDILRSPVSV LRSPFTVDET SAVIVKEEPS ATTVSETFSD 240 FSAPLFADDD LFDFRSDFLA GDLFGEDLFA DTTCTGMNFG FDFGSGLSSW HVEDHFQDIG 300 DLFGSDPLAV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-20 | 119 | 176 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-20 | 119 | 176 | 4 | 62 | ATERF1 |
3gcc_A | 3e-20 | 119 | 176 | 4 | 62 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 68 | 72 | KRRRI |
2 | 96 | 103 | PKRRRRKR |
3 | 97 | 102 | KRRRRK |
4 | 97 | 103 | KRRRRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009137389.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009137389.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF2 | ||||
Refseq | XP_013735062.1 | 0.0 | ethylene-responsive transcription factor CRF2 | ||||
Swissprot | Q9SUQ2 | 1e-137 | CRF2_ARATH; Ethylene-responsive transcription factor CRF2 | ||||
TrEMBL | M4DRX7 | 0.0 | M4DRX7_BRARP; Uncharacterized protein | ||||
STRING | Bra019270.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 1e-111 | cytokinin response factor 2 |
Publications ? help Back to Top | |||
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