PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009137012.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 1292aa    MW: 145812 Da    PI: 7.9158
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009137012.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.73.3e-1621125199
                     EEEE-..-HHHHTT-E.E--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
              B3   1 ffkvltpsdvlksgrl.vlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                     f+k lt+sd ++++   v  ++ + ++             +++ l++ede+g+ W++ ++  + s+ryvltkGW+++vk+++L +gDfv +++  
  XP_009137012.1  21 FEKCLTTSDLSNLDTNvVTANEDVGKYfrlvtvvvR---GTEQILRIEDEEGKPWQFGFTDLNVSQRYVLTKGWSNYVKEKQLGVGDFVFLQRLF 112
                     788888888888854414455667777888775442...35568***************99*******************************888 PP

                     SSEE..EEEEE-S CS
              B3  87 rsefelvvkvfrk 99 
                     +++ +l+++++r+
  XP_009137012.1 113 TDSSRLFIGFRRR 125
                     8778899999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-1914127IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-1220123IPR015300DNA-binding pseudobarrel domain
CDDcd100173.46E-1020124No hitNo description
SMARTSM010191.2E-421126IPR003340B3 DNA binding domain
PfamPF023623.2E-1421125IPR003340B3 DNA binding domain
PROSITE profilePS5086311.12462126IPR003340B3 DNA binding domain
SMARTSM002552.1E-6163303IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015822.5E-15177282IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF522002.75E-13181279IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS501048.987211275IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.40.50.101406.8E-6212278IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525401.67E-38332575IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.1E-19345580IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3005.0E-4347362IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003642.0E-19349364No hitNo description
Gene3DG3DSA:3.40.50.3003.5E-4363486IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003642.0E-19425439No hitNo description
PRINTSPR003642.0E-19516530No hitNo description
SuperFamilySSF467859.25E-6552655IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:3.40.50.3005.0E-4603653IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.80.10.108.7E-14662835IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520586.12E-34675906IPR032675Leucine-rich repeat domain, L domain-like
PfamPF077257.7E-8741758IPR011713Leucine-rich repeat 3
Gene3DG3DSA:3.80.10.103.2E-11836906IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003642.0E-19872888No hitNo description
SMARTSM005094.0E-59911065IPR003617Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
Gene3DG3DSA:1.20.930.102.1E-149911064IPR017923Transcription factor IIS, N-terminal
CDDcd001834.67E-109921064No hitNo description
PROSITE profilePS5131915.5349921066IPR017923Transcription factor IIS, N-terminal
SuperFamilySSF476762.62E-129921073IPR017923Transcription factor IIS, N-terminal
PfamPF087113.5E-910131062IPR017923Transcription factor IIS, N-terminal
PROSITE profilePS5010310.86811231151IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1292 aa     Download sequence    Send to blast
MRQPWKRNSR SHWSNSMEIL FEKCLTTSDL SNLDTNVVTA NEDVGKYFRL VTVVVRGTEQ  60
ILRIEDEEGK PWQFGFTDLN VSQRYVLTKG WSNYVKEKQL GVGDFVFLQR LFTDSSRLFI  120
GFRRREAVLG QCQDLTSLAT ASEKLKEVET PLQLRSPRHS VTGFDGILLV SGGDNQDSEE  180
RYFISYISKE LCLRGFTPLI YDLTKSTLAG VEMLHRSRVG IIIFSNNYAS SRQCLDKFVA  240
ILDYSKANNF VLLPVFFKVK VSDIRGQSGS FRRAFSRLEH SVLSSQVPTL TAINKYQYMK  300
GEDVILAKSI VSDVCLLLNS ETNMKLRGRL QIQSILSLLN CSHFSAPHIV GLWGMAGIGK  360
TAITREIFRR QAERYDVCYF LPDFHIVCQT RGLSHLRDEF FSRISGEEKV TIDACDTKLG  420
FIRDRFLSKK VLVVLDGVSS ARDAEFLVGG FGWFSGGHTL ILTSRNRQVL VQCNAKEIYE  480
IQKLSERESL QLCSQFATEQ NWKGSTSLVS ELVNYASGIP LALCALGSSL QNQCIKDEKQ  540
HLKRLRQNPL VEIQDAFKRS FNVLDGNEKN TFLDLACFFR GENKDYVVNI LDGCGFLTEL  600
GIYGLIDESL ISIVDNKIEM LNIFQDTGRF VVCQESSETG KRSRLWDPSD IVDVLTNNSG  660
TEAIEGIFLD STGLTVELSP TVFEKIYRLR FLKLYSPTSK NHCNVSLPQG LYSLPDELRL  720
LHWERCPLES LPRKFNPKNI VELNMPYSNM TKLWKGTKNL ENLKRIILSH SRRLIKFPRL  780
SKARNLEHID LEGCTSLVKV NSSILHHHKL IFLSLKDCSH LQTMPTTVHL EALEVLNLSG  840
CLELEDFPDF SPNLKELYLA GTAIREMPSS IGGLSKLVTL DLENCDRLQH LPPEIRNLKV  900
VVTLSAKRPA ASMNLSSVED KAPPYTRCRL KRVIESVILS LRKKKRENTV PRADMRVNEK  960
TMEEKEVREK SVDGDNDDDF DPFATLCDDR KKSILKIQEK LEDPDLSEEA LVELLQKLEY  1020
VDITLKDLQG SNIGRLVNLV QRRRTGNAKR LAQQLIKKWK ETVEKTLTDK QPSDLKPPNL  1080
IGKRKECNSE SQNKHRSHPF HHPKDTETSV PEGSLNLEGL PLRPGKPVCA SYFHTGSCIS  1140
GPTCIFDHPS LIPVHKTTSL YSNQLGLSSS IGDSSSDLVG PATKQRRIHK NTSSMASETL  1200
HSSPLGFASS IGDSSSELVE ASTKKPPVHK NTSSLVPQMP HFNPLGFSYS IGDSSSELVE  1260
ASTVSEITHT NVGRNPSDSW DDEEDSQFWL HL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-161812711119DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDisease resistance protein that cooperates with RPP2B to confer resistance to Hyaloperonospora parasitica isolate Cala2. {ECO:0000269|PubMed:15165183}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009137012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ8428450.0FJ842845.1 Brassica rapa subsp. pekinensis isolate BrTNL19 disease resistance protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137012.10.0PREDICTED: probable WRKY transcription factor 19
SwissprotF4JT780.0RPP2A_ARATH; Disease resistance protein RPP2A
TrEMBLD1GEI40.0D1GEI4_BRARP; Disease resistance protein
STRINGBra012540.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5462920
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.11e-145WRKY family protein
Publications ? help Back to Top
  1. Meyers BC,Morgante M,Michelmore RW
    TIR-X and TIR-NBS proteins: two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes.
    Plant J., 2002. 32(1): p. 77-92
    [PMID:12366802]
  2. Sinapidou E, et al.
    Two TIR:NB:LRR genes are required to specify resistance to Peronospora parasitica isolate Cala2 in Arabidopsis.
    Plant J., 2004. 38(6): p. 898-909
    [PMID:15165183]
  3. Kempema LA,Cui X,Holzer FM,Walling LL
    Arabidopsis transcriptome changes in response to phloem-feeding silverleaf whitefly nymphs. Similarities and distinctions in responses to aphids.
    Plant Physiol., 2007. 143(2): p. 849-65
    [PMID:17189325]