PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009136979.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 271aa MW: 31274.8 Da PI: 10.2739 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.9 | 4.2e-31 | 63 | 113 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaev +i+fss+g+lyeys+ XP_009136979.1 63 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVTLIVFSSRGRLYEYSN 113 79***********************************************95 PP | |||||||
2 | K-box | 103.5 | 2.7e-34 | 132 | 225 | 5 | 98 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ ++e + +++qqe+akL+++i ++q+++R+l+Ge ++s+s keL++Le +L++s+++iRskKnell+++i+++qk+e +l++en++Lr+k XP_009136979.1 132 NTGTVAEINGQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLDRSINRIRSKKNELLFAEIDYMQKREVDLHSENQRLRAKE 225 334489999**********************************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.067 | 55 | 115 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-39 | 55 | 114 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.15E-32 | 56 | 130 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.88E-43 | 56 | 129 | No hit | No description |
PRINTS | PR00404 | 2.7E-32 | 57 | 77 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 57 | 111 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.4E-26 | 64 | 111 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-32 | 77 | 92 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-32 | 92 | 113 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 14.314 | 141 | 231 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.8E-26 | 141 | 224 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MADLEPFSRT FVHAFLGFLF LIDQFCPKYS WFCSMSNMAY QMELGGDSSP QRKSAGRGKI 60 EIKRIENTTN RQVTFCKRRN GLLKKAYELS VLCDAEVTLI VFSSRGRLYE YSNNSVKGTI 120 ERYKKAISDN TNTGTVAEIN GQYYQQESAK LRQQIISIQN SNRQLMGETI GSMSPKELRN 180 LEGRLDRSIN RIRSKKNELL FAEIDYMQKR EVDLHSENQR LRAKEDTNRL CSRLKRNLNR 240 LIHGTISKSL HCNLTITITH PQVAKTKPLF S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1egw_A | 1e-18 | 56 | 123 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_B | 1e-18 | 56 | 123 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_C | 1e-18 | 56 | 123 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_D | 1e-18 | 56 | 123 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1tqe_P | 2e-18 | 56 | 123 | 2 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-18 | 56 | 123 | 2 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-18 | 56 | 123 | 2 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-18 | 56 | 123 | 2 | 69 | Myocyte-specific enhancer factor 2B |
3mu6_A | 1e-18 | 56 | 123 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_B | 1e-18 | 56 | 123 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_C | 1e-18 | 56 | 123 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_D | 1e-18 | 56 | 123 | 1 | 68 | Myocyte-specific enhancer factor 2A |
6c9l_A | 2e-18 | 56 | 123 | 2 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-18 | 56 | 123 | 2 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-18 | 56 | 123 | 2 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-18 | 56 | 123 | 2 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-18 | 56 | 123 | 2 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-18 | 56 | 123 | 2 | 69 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.15497 | 0.0 | bud |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009136979.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY277692 | 0.0 | AY277692.1 Eruca sativa AGAMOUS-like protein EsAG3 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009136979.1 | 0.0 | PREDICTED: floral homeotic protein AGAMOUS isoform X5 | ||||
Swissprot | Q01540 | 1e-125 | AG_BRANA; Floral homeotic protein AGAMOUS | ||||
TrEMBL | M4D7V4 | 1e-131 | M4D7V4_BRARP; Uncharacterized protein | ||||
STRING | Bra012564.1-P | 1e-132 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-109 | MIKC_MADS family protein |