PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009136979.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 271aa    MW: 31274.8 Da    PI: 10.2739
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009136979.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.94.2e-3163113151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                     krien++nrqvtf+kRrng+lKKA+ELSvLCdaev +i+fss+g+lyeys+
  XP_009136979.1  63 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVTLIVFSSRGRLYEYSN 113
                     79***********************************************95 PP

2K-box103.52.7e-34132225598
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     ++  ++e + +++qqe+akL+++i ++q+++R+l+Ge ++s+s keL++Le +L++s+++iRskKnell+++i+++qk+e +l++en++Lr+k 
  XP_009136979.1 132 NTGTVAEINGQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLDRSINRIRSKKNELLFAEIDYMQKREVDLHSENQRLRAKE 225
                     334489999**********************************************************************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.06755115IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-3955114IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.15E-3256130IPR002100Transcription factor, MADS-box
CDDcd002656.88E-4356129No hitNo description
PRINTSPR004042.7E-325777IPR002100Transcription factor, MADS-box
PROSITE patternPS00350057111IPR002100Transcription factor, MADS-box
PfamPF003195.4E-2664111IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-327792IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-3292113IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.314141231IPR002487Transcription factor, K-box
PfamPF014861.8E-26141224IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MADLEPFSRT FVHAFLGFLF LIDQFCPKYS WFCSMSNMAY QMELGGDSSP QRKSAGRGKI  60
EIKRIENTTN RQVTFCKRRN GLLKKAYELS VLCDAEVTLI VFSSRGRLYE YSNNSVKGTI  120
ERYKKAISDN TNTGTVAEIN GQYYQQESAK LRQQIISIQN SNRQLMGETI GSMSPKELRN  180
LEGRLDRSIN RIRSKKNELL FAEIDYMQKR EVDLHSENQR LRAKEDTNRL CSRLKRNLNR  240
LIHGTISKSL HCNLTITITH PQVAKTKPLF S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A1e-1856123168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B1e-1856123168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C1e-1856123168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D1e-1856123168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1tqe_P2e-1856123269Myocyte-specific enhancer factor 2B
1tqe_Q2e-1856123269Myocyte-specific enhancer factor 2B
1tqe_R2e-1856123269Myocyte-specific enhancer factor 2B
1tqe_S2e-1856123269Myocyte-specific enhancer factor 2B
3mu6_A1e-1856123168Myocyte-specific enhancer factor 2A
3mu6_B1e-1856123168Myocyte-specific enhancer factor 2A
3mu6_C1e-1856123168Myocyte-specific enhancer factor 2A
3mu6_D1e-1856123168Myocyte-specific enhancer factor 2A
6c9l_A2e-1856123269Myocyte-specific enhancer factor 2B
6c9l_B2e-1856123269Myocyte-specific enhancer factor 2B
6c9l_C2e-1856123269Myocyte-specific enhancer factor 2B
6c9l_D2e-1856123269Myocyte-specific enhancer factor 2B
6c9l_E2e-1856123269Myocyte-specific enhancer factor 2B
6c9l_F2e-1856123269Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.154970.0bud
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009136979.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2776920.0AY277692.1 Eruca sativa AGAMOUS-like protein EsAG3 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136979.10.0PREDICTED: floral homeotic protein AGAMOUS isoform X5
SwissprotQ015401e-125AG_BRANA; Floral homeotic protein AGAMOUS
TrEMBLM4D7V41e-131M4D7V4_BRARP; Uncharacterized protein
STRINGBra012564.1-P1e-132(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-109MIKC_MADS family protein