PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009136927.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 382aa MW: 42262.9 Da PI: 7.6883 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 123.1 | 3.2e-38 | 53 | 194 | 2 | 136 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssaseceaesssssasnsssg.. 88 g+kdrhsk+ T++g+RdRRvRls+++a +f+dLqd+LG+d++sk++eWL+++a+ +i el+++ ++++++ + + + XP_009136927.1 53 SGGKDRHSKVWTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELPSLnntnfpM-------NDDDNQIPTLTG--Asp 138 689*************************************************************4433331.......222222222211..122 PP TCP 89 ......kaaksaa.kskksqksaasalnlak.esrakarararertrekmriknkl 136 ++ +++a +s++++++++s l+l++ e r kar+rarert+++ + ++ + XP_009136927.1 139 taaaaaNSLSKSAcSSNSDTSKNSSGLSLSRsELRDKARERARERTAKETKERDGN 194 444555455555547778888888889999999**************999888665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.5E-38 | 54 | 190 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.229 | 55 | 113 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.205 | 170 | 191 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 382 aa Download sequence Send to blast |
MVIEKLRNES IGDDEMIGDL MKNNNGDVVD NTNNRLSRWH HNSSRIIRVS RASGGKDRHS 60 KVWTSKGPRD RRVRLSVSTA LQFYDLQDRL GYDQPSKAVE WLIKAAEDSI SELPSLNNTN 120 FPMNDDDNQI PTLTGASPTA AAAANSLSKS ACSSNSDTSK NSSGLSLSRS ELRDKARERA 180 RERTAKETKE RDGNNNHHTT SFTDLLNSGS DPVNANRQWM APSSSPAPME YFSSGLILGS 240 GQTHFPIQTN SHPFDHHHHH HQPHQEFSFV PDHLISPAGS NGGGAFNLDF NMSTTSVAST 300 GFSGFNRGTL QSNSTNHHHQ HQSFLANLQR FPSSEGGGGP QFLFGMPAEN QHPHHNNNNN 360 HQFQLYYENG CRNSDQKGKG KN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 7e-24 | 60 | 114 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 7e-24 | 60 | 114 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bra.25720 | 0.0 | flower| root |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During flower development, first observed throughout the floral meristem. Later expressed in rapidly growing floral primordia. Detected to a lower extent in vegetative primordia. During flower development, first observed throughout the floral meristem. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:10363373, ECO:0000269|PubMed:25378179}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009136927.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189553 | 0.0 | AC189553.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006A08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009136927.1 | 0.0 | PREDICTED: transcription factor TCP2-like | ||||
Swissprot | Q93V43 | 0.0 | TCP2_ARATH; Transcription factor TCP2 | ||||
TrEMBL | A0A397L054 | 0.0 | A0A397L054_BRACM; Uncharacterized protein | ||||
TrEMBL | M4D7Z0 | 0.0 | M4D7Z0_BRARP; Uncharacterized protein | ||||
STRING | Bra012600.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7615 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18390.2 | 1e-131 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|