PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009136872.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 349aa    MW: 39444.4 Da    PI: 5.4479
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009136872.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.5e-141562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd +lv ++ + G g W++ ++  g++R++k+c++rw +yl
   XP_009136872.1 15 KGPWMPEEDYKLVAYIDKNGYGKWRSLPNLAGLNRCGKSCRLRWMNYL 62
                     79********************************************97 PP
2Myb_DNA-binding56.65.7e-1868113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +T eE+   v+++++lG++ W++Ia++++ gRt++++k++w++++
   XP_009136872.1  68 RGEFTDEEESTVVKLHALLGNK-WSKIASHLP-GRTDNEIKNYWNTHM 113
                      899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.661062IPR017930Myb domain
SuperFamilySSF466894.12E-2912109IPR009057Homeodomain-like
SMARTSM007176.0E-91464IPR001005SANT/Myb domain
PfamPF002491.5E-121562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-211669IPR009057Homeodomain-like
CDDcd001673.14E-71762No hitNo description
PROSITE profilePS5129427.02463117IPR017930Myb domain
SMARTSM007177.4E-1767115IPR001005SANT/Myb domain
PfamPF002495.1E-1668112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2770117IPR009057Homeodomain-like
CDDcd001672.05E-1270113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGRSPCCDQD KGVKKGPWMP EEDYKLVAYI DKNGYGKWRS LPNLAGLNRC GKSCRLRWMN  60
YLRPDIRRGE FTDEEESTVV KLHALLGNKW SKIASHLPGR TDNEIKNYWN THMKKKMLQM  120
GIDPITHEPK TNDLSPILDV SQMLAAAIGN SQFGNNTLFN NNIAVEDLLK LQLIHKMLQI  180
IAPKAIPNIN SFNTNSFNTK REPVVNNIKT NPVNPKPKLA AAGQLNAIER HVFTNQTEDE  240
DFMPSFEDVW DCFEDNQLPG LVTVSQVNYQ TGDGMMPEYY GDQLREIPST GSISVTPETS  300
GLNYPSKTQH SSGSDILEDW EKFLDDETND SCWKSFLDLT SPTSSPGPW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-261511727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009136872.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136872.10.0PREDICTED: transcription factor MYB39
RefseqXP_013741326.10.0transcription factor MYB39-like
SwissprotQ8GWP00.0MYB39_ARATH; Transcription factor MYB39
TrEMBLM4D8310.0M4D831_BRARP; Uncharacterized protein
STRINGBra012641.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122431730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17785.10.0myb domain protein 39