PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009136807.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 177aa MW: 19704.1 Da PI: 6.6846 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.7 | 5.8e-18 | 39 | 88 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g XP_009136807.1 39 NFRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFSTPEMAARAHDVAALAIKG 88 59****998.**********854...6**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.40E-34 | 38 | 98 | No hit | No description |
Pfam | PF00847 | 9.4E-12 | 38 | 88 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.537 | 39 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-21 | 39 | 97 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.8E-32 | 39 | 97 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-38 | 39 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-10 | 40 | 51 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-10 | 62 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MQDSSLPRPE RILRSPAPEK TINSSKTRDD QKGVSKHPNF RGVRMRQWGK WVSEIREPKK 60 KSRIWLGTFS TPEMAARAHD VAALAIKGGS AHLNFPELAC HLPRPASSDP KDIQAAATAA 120 AVEWKPPESP SSTATSSSVA DDAFSDLPDL LLDVNDHKVD GFWDSFPYEE PFFMENY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-16 | 32 | 96 | 6 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009136807.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL161544 | 1e-153 | AL161544.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44. | |||
GenBank | AY560874 | 1e-153 | AY560874.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At4g16750) mRNA, complete cds. | |||
GenBank | BT011576 | 1e-153 | BT011576.1 Arabidopsis thaliana At4g16750 mRNA, complete cds. | |||
GenBank | BT020592 | 1e-153 | BT020592.1 Arabidopsis thaliana At4g16750 gene, complete cds. | |||
GenBank | CP002687 | 1e-153 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | Z97341 | 1e-153 | Z97341.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009136807.1 | 1e-128 | PREDICTED: ethylene-responsive transcription factor ERF039-like | ||||
Swissprot | Q9SUK8 | 5e-95 | ERF39_ARATH; Ethylene-responsive transcription factor ERF039 | ||||
TrEMBL | A0A3P6ACI2 | 1e-127 | A0A3P6ACI2_BRACM; Uncharacterized protein | ||||
TrEMBL | M4D883 | 1e-127 | M4D883_BRARP; Uncharacterized protein | ||||
STRING | Bra012693.1-P | 1e-128 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2492 | 23 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16750.1 | 6e-88 | ERF family protein |
Publications ? help Back to Top | |||
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