PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009136765.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 456aa    MW: 51152.8 Da    PI: 6.7191
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009136765.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.2e-12309355455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI + q
  XP_009136765.1 309 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLADAITYIIEIQ 355
                     799***********************66......***************7765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.9E-4256232IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474594.45E-17305371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.98305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.92E-13308359No hitNo description
PfamPF000102.6E-9309355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-16309371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-13311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MNVTGESMVG QKFWESQEDR AMVESAIGTE ACDFFISSNT SLPKLLPPPP PTDPNLQQGL  60
RHVVEGSDWD YAVFWLASNV NSSDGCVLIW GDGYYRASQK GNSSDKEDDE TKRRVLRKLH  120
LSFTGSEEDH RLVKSGGLLS DLDMFYLASL YFYFRCDSTK YGPAGTYVSG KPLWAADLPS  180
CLSYYRVRSF LARSAGFKTV LSVPVNCGVV ELGSLKLIPE DKSVVEMVKS VFGGSDFVQA  240
PKIFGRQLSK PRSMSINFSP KMEDESGFSL DAYEVGGSNQ VEAALYLTDE QKPRKRGRKP  300
ANGREEALNH VEAERQRREK LNQRFYALRA VVPNISKMDK ASLLADAITY IIEIQKKRRV  360
YETEKQVMKR RESNQITPAD VDYQQRHDDA VVRVSCPLET HPVSKVVQMF RENEVTPHDT  420
NVAVTEEGVV HTFTVRPQGG CTAEELKDKL LASLSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-25303386281Transcription factor MYC2
5gnj_B7e-25303386281Transcription factor MYC2
5gnj_E7e-25303386281Transcription factor MYC2
5gnj_F7e-25303386281Transcription factor MYC2
5gnj_G7e-25303386281Transcription factor MYC2
5gnj_I7e-25303386281Transcription factor MYC2
5gnj_M7e-25303386281Transcription factor MYC2
5gnj_N7e-25303386281Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009136765.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896320.0AC189632.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS003O10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136765.10.0PREDICTED: transcription factor bHLH3-like
SwissprotO234870.0BH003_ARATH; Transcription factor bHLH3
TrEMBLM4D8B00.0M4D8B0_BRARP; Uncharacterized protein
STRINGBra012720.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66112741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]