PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009136587.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 1281aa    MW: 140912 Da    PI: 7.4787
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009136587.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.38.5e-0612601281426
                      ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH    4 elCrffartGtCkyGdrCkFaHg 26  
                      ++C+ f+++G Ck G++C+F H+
  XP_009136587.1 1260 KICK-FYESGNCKKGASCSFWHP 1281
                      6899.8999***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.108.5E-882146IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.68E-783140IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.84988154IPR019787Zinc finger, PHD-finger
CDDcd155686.88E-2090135No hitNo description
SMARTSM002494.6E-790136IPR001965Zinc finger, PHD-type
PROSITE patternPS01359091151IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001510.0036294384IPR019835SWIB domain
SuperFamilySSF475925.89E-19302380IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.102.7E-21303385IPR003121SWIB/MDM2 domain
PfamPF022011.5E-11308379IPR003121SWIB/MDM2 domain
SMARTSM007193.4E-47438548IPR004343Plus-3 domain
PROSITE profilePS5136018.756438571IPR004343Plus-3 domain
SuperFamilySSF1590421.96E-25439567IPR004343Plus-3 domain
PfamPF031261.9E-17443546IPR004343Plus-3 domain
SuperFamilySSF552771.07E-15707763IPR003169GYF domain
CDDcd000727.53E-19710767No hitNo description
PROSITE profilePS5082915.615710764IPR003169GYF domain
SMARTSM004441.2E-14711766IPR003169GYF domain
PfamPF022131.6E-11712756IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.0E-16712764IPR003169GYF domain
SuperFamilySSF902297.72E-612561280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.15512561281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-412601280IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1281 aa     Download sequence    Send to blast
MKNQLQRGAS SRGEESSVRG IDLMRVEQCE EIDALSVPAP TVGGTVQQEA PVKRKRGRPP  60
KALAKTPLQT QPPPPPPPPI PRKDDKEEDV CFICFDGGDL VLCDRRNCPK AYHPSCINRD  120
EAFFRTTAKW NCGWHICSKC QKSSSYLCYT CTFSVCKRCV ADADYVFVRG NMGLCGTCIK  180
PIMLIENIGQ GDVQAVKVDF DDKLSWEYLF KVYWLCMKEE LSLTVDELMR AYNPWKEVPY  240
TVPKVELRND HTRNNVYSSG SSALDAAENG IKRRKTSDSP TLPSKLDAKN PSNTPKKRPG  300
DTNWATKELL EFLSFMRNGD TSVISQFDVQ GLLLDYINKK NLRDPHQESQ VICDLMLVKL  360
FGKQRVGHIE MLKLLESHFL IQEKPKDEKT TNGETTHAVP SQVVEDIGHD PPVRDRRRKM  420
HRKTVGRVQN ESLDAYAAID VHNINLIYLR RKFLETLLDD INKVHEKVVG TILRIKVSGS  480
DQKLDIHRLV QVVGTSKAAA TYQLGAKTTD VMLEILNLEK REVISIDQLS DQNVTEDECK  540
RLRQSIKCGL NKRLTVGDIL KTATTLQAMR INEALEAEIL KVKHLRDRAS EKGHRKELRE  600
CVEKLGILES PEHRQRLLQE VPEVHTDPSM DPSHPSAEDS VLDNHIKAPS KGPKKKGNTL  660
NNLGNNAQTK YDAPVLRSRK ALNVAKKDDC SKVHNNSSDI QESGKDDEES EIWHYRDPTG  720
KTQGPFSMGQ LRRWKSSGHF PPYLRIWKAH ENQDESVLLT EALAGRFDKA TTSPSSSLLP  780
QELKLSQHDS GRTGVDGDCL QKNLTPVSNS AASSSSSTVS ALPNDPKEKQ VATLLPCSGK  840
VKDGNSVRSQ PQVSCSASMS VVPGHVVSPD AGATSGADGK TVEEGTNGGS VHAPNLNQEI  900
HVPDIPSPTP KSSSEDLEAQ AAETIQSLSS CVLAKGTSGV TWSTTTTTTT DAVTTTSSVM  960
VTGGQLPQVT HQNAVVSAAP SVKPIDLAAD HATATQTSDN TQVAHSSGWP AIVADPDECD  1020
ESVSDLLAEV EAMEQNGLPS SPTSTFHYDD DDLTKGPEKD FFNPVARLSL TPETCRMNTS  1080
QPNILDNVST GKSSMGTESK DNTLFNHCRT SGPELLLFAP PVPASISQDL TLTTTALRLG  1140
SDTAVEAGSV QRLPKSVSGV SLEPSPWSTS LHDSPRGNTE RSPRGNTERS PRGNTERSPR  1200
GNGSHQRRSG GHSRDRQWWN NGHNTSVNNS HNNRQWPNST RHGYDHGSGS YTAHPPKGLK  1260
ICKFYESGNC KKGASCSFWH P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A6e-14881571581Histone-lysine N-methyltransferase NSD3
4gnd_C6e-14881571581Histone-lysine N-methyltransferase NSD3
4gne_A6e-14881571581Histone-lysine N-methyltransferase NSD3
4gnf_A6e-14881571581Histone-lysine N-methyltransferase NSD3
4gng_A6e-14881571581Histone-lysine N-methyltransferase NSD3
4gng_D6e-14881571581Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.273590.0flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009136587.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896270.0AC189627.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS001M03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136587.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like isoform X2
SwissprotQ9SD340.0C3H44_ARATH; Zinc finger CCCH domain-containing protein 44
TrEMBLM4D8Q80.0M4D8Q8_BRARP; Uncharacterized protein
STRINGBra012868.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding