PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009136586.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 1286aa    MW: 141483 Da    PI: 7.622
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009136586.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.38.5e-0612651286426
                      ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH    4 elCrffartGtCkyGdrCkFaHg 26  
                      ++C+ f+++G Ck G++C+F H+
  XP_009136586.1 1265 KICK-FYESGNCKKGASCSFWHP 1286
                      6899.8999***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.108.5E-882146IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.68E-783140IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.84988154IPR019787Zinc finger, PHD-finger
CDDcd155686.65E-2090135No hitNo description
SMARTSM002494.6E-790136IPR001965Zinc finger, PHD-type
PROSITE patternPS01359091151IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001510.0036294384IPR019835SWIB domain
SuperFamilySSF475925.89E-19302380IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.102.7E-21303385IPR003121SWIB/MDM2 domain
PfamPF022011.5E-11308379IPR003121SWIB/MDM2 domain
SMARTSM007193.4E-47438548IPR004343Plus-3 domain
PROSITE profilePS5136018.756438571IPR004343Plus-3 domain
SuperFamilySSF1590421.96E-25439567IPR004343Plus-3 domain
PfamPF031262.0E-17443546IPR004343Plus-3 domain
SuperFamilySSF552771.09E-15712768IPR003169GYF domain
CDDcd000727.57E-19715772No hitNo description
PROSITE profilePS5082915.615715769IPR003169GYF domain
SMARTSM004441.2E-14716771IPR003169GYF domain
PfamPF022131.7E-11717761IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.0E-16717769IPR003169GYF domain
PROSITE profilePS5010314.15512611286IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-612611285IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-412651285IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1286 aa     Download sequence    Send to blast
MKNQLQRGAS SRGEESSVRG IDLMRVEQCE EIDALSVPAP TVGGTVQQEA PVKRKRGRPP  60
KALAKTPLQT QPPPPPPPPI PRKDDKEEDV CFICFDGGDL VLCDRRNCPK AYHPSCINRD  120
EAFFRTTAKW NCGWHICSKC QKSSSYLCYT CTFSVCKRCV ADADYVFVRG NMGLCGTCIK  180
PIMLIENIGQ GDVQAVKVDF DDKLSWEYLF KVYWLCMKEE LSLTVDELMR AYNPWKEVPY  240
TVPKVELRND HTRNNVYSSG SSALDAAENG IKRRKTSDSP TLPSKLDAKN PSNTPKKRPG  300
DTNWATKELL EFLSFMRNGD TSVISQFDVQ GLLLDYINKK NLRDPHQESQ VICDLMLVKL  360
FGKQRVGHIE MLKLLESHFL IQEKPKDEKT TNGETTHAVP SQVVEDIGHD PPVRDRRRKM  420
HRKTVGRVQN ESLDAYAAID VHNINLIYLR RKFLETLLDD INKVHEKVVG TILRIKVSGS  480
DQKLDIHRLV QVVGTSKAAA TYQLGAKTTD VMLEILNLEK REVISIDQLS DQNVTEDECK  540
RLRQSIKCGL NKRLTVGDIL KTATTLQAMR INEALEAEIL KVKHLRDRAS EKGHRKELRE  600
CVEKLGILES PEHRQRLLQE VPEVHTDPSM DPSHPSAEDS VLGTRKQDNH IKAPSKGPKK  660
KGNTLNNLGN NAQTKYDAPV LRSRKALNVA KKDDCSKVHN NSSDIQESGK DDEESEIWHY  720
RDPTGKTQGP FSMGQLRRWK SSGHFPPYLR IWKAHENQDE SVLLTEALAG RFDKATTSPS  780
SSLLPQELKL SQHDSGRTGV DGDCLQKNLT PVSNSAASSS SSTVSALPND PKEKQVATLL  840
PCSGKVKDGN SVRSQPQVSC SASMSVVPGH VVSPDAGATS GADGKTVEEG TNGGSVHAPN  900
LNQEIHVPDI PSPTPKSSSE DLEAQAAETI QSLSSCVLAK GTSGVTWSTT TTTTTDAVTT  960
TSSVMVTGGQ LPQVTHQNAV VSAAPSVKPI DLAADHATAT QTSDNTQVAH SSGWPAIVAD  1020
PDECDESVSD LLAEVEAMEQ NGLPSSPTST FHYDDDDLTK GPEKDFFNPV ARLSLTPETC  1080
RMNTSQPNIL DNVSTGKSSM GTESKDNTLF NHCRTSGPEL LLFAPPVPAS ISQDLTLTTT  1140
ALRLGSDTAV EAGSVQRLPK SVSGVSLEPS PWSTSLHDSP RGNTERSPRG NTERSPRGNT  1200
ERSPRGNGSH QRRSGGHSRD RQWWNNGHNT SVNNSHNNRQ WPNSTRHGYD HGSGSYTAHP  1260
PKGLKICKFY ESGNCKKGAS CSFWHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A6e-14881571581Histone-lysine N-methyltransferase NSD3
4gnd_C6e-14881571581Histone-lysine N-methyltransferase NSD3
4gne_A6e-14881571581Histone-lysine N-methyltransferase NSD3
4gnf_A6e-14881571581Histone-lysine N-methyltransferase NSD3
4gng_A6e-14881571581Histone-lysine N-methyltransferase NSD3
4gng_D6e-14881571581Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.273590.0flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009136586.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896270.0AC189627.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS001M03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136586.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like isoform X1
SwissprotQ9SD340.0C3H44_ARATH; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A398A3U50.0A0A398A3U5_BRACM; Uncharacterized protein
STRINGBra012868.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77872130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding