PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009136567.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ZF-HD
Protein Properties Length: 283aa    MW: 31753.2 Da    PI: 10.223
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009136567.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer86.33.2e-2791146258
     ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                     ++++Y+eC+kNhAa +Ggh+vDGC+Efmp  gee t+ alkCaAC+C R+FHR+ev 
  XP_009136567.1  91 QAAKYEECQKNHAALTGGHVVDGCCEFMPG-GEEVTSGALKCAACNCPRSFHRKEVY 146
                     5689*************************9.9999*******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576128No hitNo description
PfamPF047705.0E-2593145IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.6E-2494145IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-2094145IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.27195144IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.28E-17202274IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-24208274IPR009057Homeodomain-like
PROSITE profilePS500718.633211275IPR001356Homeobox domain
TIGRFAMsTIGR015657.1E-24213270IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MKGNRCTHVT TTTTISISPS SSISISSCTL VFAETSQIFT MEHGGNCNAI TSTTITLKAK  60
PNTNPDPKTK PGSDSFLIKK ENQKPRTRSN QAAKYEECQK NHAALTGGHV VDGCCEFMPG  120
GEEVTSGALK CAACNCPRSF HRKEVYGHRN STQEELISPT FYRSGNSYKA IQPRGVYPTG  180
EIGRRTSSSS EDMKKILNQN SDGKGLMMIT RKKKRVRTKI NEGQKKKMKE FAERLGWSIQ  240
KKDEEEIDKF CRTVNLRRQV FKVWMHNNKQ AMKRNGNICD LQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-162142691873ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212226KKRVRTKINEGQKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.254380.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009136567.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891890.0AC189189.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002E24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136567.10.0PREDICTED: zinc-finger homeodomain protein 7-like isoform X1
SwissprotQ9SVL01e-118ZHD7_ARATH; Zinc-finger homeodomain protein 7
TrEMBLA0A398A4T81e-179A0A398A4T8_BRACM; Uncharacterized protein
STRINGBo7g100590.11e-171(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138541525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50890.11e-109homeobox protein 28