PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009136478.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 220aa    MW: 25325.2 Da    PI: 6.9304
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009136478.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF871.1e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++ rq+tfskRr+g+lKKA ELSvLCda+va i+fs++gk+ye++s
  XP_009136478.1  9 KRIENQTSRQITFSKRRKGLLKKALELSVLCDAQVAAIVFSQKGKIYEFAS 59
                    79***********************************************86 PP

2K-box547.1e-1983176999
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk...ekelqeenkaLrkkle 99 
                     +ee++ + l++e++ + ++ie Lq   R+l+G+dL+s+s+ eL+++  q+eksl+ iRs+K ++  e++ +l+      +el +e  +L++++e
  XP_009136478.1  83 QEERDVQDLKNEVTVMVNRIELLQLHCRKLMGQDLGSCSVDELNEITIQIEKSLTLIRSRKAKVHEEEVGKLKAEiagTRELVNERATLHEMFE 176
                     678899******************999*********************************************9863335777888888888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.16161IPR002100Transcription factor, MADS-box
SMARTSM004325.9E-39160IPR002100Transcription factor, MADS-box
CDDcd002656.36E-37367No hitNo description
SuperFamilySSF554559.55E-30370IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-29323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.4E-1883175IPR002487Transcription factor, K-box
PROSITE profilePS5129710.9988181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MVRGKIEIKR IENQTSRQIT FSKRRKGLLK KALELSVLCD AQVAAIVFSQ KGKIYEFASS  60
DMKKMMEQCE IYRSGYFHAE RLQEERDVQD LKNEVTVMVN RIELLQLHCR KLMGQDLGSC  120
SVDELNEITI QIEKSLTLIR SRKAKVHEEE VGKLKAEIAG TRELVNERAT LHEMFEEKPL  180
WMQSGSLESE NNALSSSAFE NMNISDVETD LFIGLPRRQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-18166166MEF2C
5f28_B3e-18166166MEF2C
5f28_C3e-18166166MEF2C
5f28_D3e-18166166MEF2C
6byy_A3e-18166166MEF2 CHIMERA
6byy_B3e-18166166MEF2 CHIMERA
6byy_C3e-18166166MEF2 CHIMERA
6byy_D3e-18166166MEF2 CHIMERA
6bz1_A4e-18166166MEF2 CHIMERA
6bz1_B4e-18166166MEF2 CHIMERA
6bz1_C4e-18166166MEF2 CHIMERA
6bz1_D4e-18166166MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}.
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009136478.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325423e-51AC232542.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005L20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136477.11e-161PREDICTED: MADS-box protein AGL71-like
RefseqXP_009136478.11e-161PREDICTED: MADS-box protein AGL71-like
RefseqXP_009136479.11e-161PREDICTED: MADS-box protein AGL71-like
RefseqXP_022572404.11e-161MADS-box protein AGL71-like
SwissprotQ9FLH53e-69AGL72_ARATH; MADS-box protein AGL72
TrEMBLA0A3P6ABR51e-148A0A3P6ABR5_BRACM; Uncharacterized protein
TrEMBLM4D8Z71e-148M4D8Z7_BRARP; Uncharacterized protein
STRINGBra012957.1-P1e-149(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51860.22e-72MIKC_MADS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]