PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009136306.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 450aa    MW: 50309.4 Da    PI: 6.2614
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009136306.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.41.2e-082973341954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +++  LA+++gL+  qV++WF N R +
  XP_009136306.1 297 FEHflHPYPKDSDKIMLARQTGLSRGQVSNWFINARVR 334
                     554459******************************88 PP
2BELL129.21.5e-41159230172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     erqelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFrcL+dai++qi
  XP_009136306.1 159 ERQELQNKLSKLLSILDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAISGQI 230
                     79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.8E-6899228IPR006563POX domain
PfamPF075261.3E-47106227IPR006563POX domain
Gene3DG3DSA:1.20.5.3504.3E-4115179No hitNo description
PROSITE profilePS5007111.531275338IPR001356Homeobox domain
CDDcd000862.55E-11278339No hitNo description
SMARTSM003897.0E-9278342IPR001356Homeobox domain
SuperFamilySSF466893.98E-17279345IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-27281344IPR009057Homeodomain-like
PfamPF059208.2E-18295334IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MATYYKSSGS SGIYSEFVPG NAMIYTNPAV SYFPGEANNV SASKEIQVLS SYGEEASHVV  60
EIQDSRSWRD QEDRACFPVM MRPTTGQGLS LGISSQIETQ VVSGFHNSKY LEAAQELLDE  120
AVNVKKALKQ FQPEGDKTEE DKEKNLQESI TNPDLPQAER QELQNKLSKL LSILDEVDRR  180
YKQYYHQMQI VVSSFDVIAG CGAAKPYTAL ALQTISRHFR CLRDAISGQI LVIRRSLGGE  240
HDGLDGRGVG ISRLRNVDQK VRQQRALQRL GVVQPHAWRP QRGLPDSSVL ILRAWLFEHF  300
LHPYPKDSDK IMLARQTGLS RGQVSNWFIN ARVRLWKPMV EEMYKEEFTD ALEENVTNLS  360
SGNNRLAETT ESQEQQLVSS SNNGGASTST VARGGEDRLM MITEMTRNGS GGMSLTLGIP  420
DNYENSFQYL NSGNGQHRLG SSQLLQDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A5e-15284342563Homeobox protein Meis2
3k2a_B5e-15284342563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009136306.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325040.0AC232504.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB057N22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136305.10.0PREDICTED: BEL1-like homeodomain protein 7
RefseqXP_009136306.10.0PREDICTED: BEL1-like homeodomain protein 7
SwissprotQ9SIW10.0BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLM4D9B60.0M4D9B6_BRARP; Uncharacterized protein
STRINGBra013076.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.10.0BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]