PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009135996.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 357aa    MW: 40859.4 Da    PI: 8.2685
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009135996.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.74.1e-1323971288
                    HTT-EE--HHH.HTT.......---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3 12 ksgrlvlpkkfaeeh.......ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
                     s+ + +p  f ++h       g++   +  ++l++  s  +Wevk+  ++++    lt GW++F+  + Lk+gD+v+F++dg+ 
  XP_009135996.1 23 HSH-INIPIAFYSKHikgttneGYV---NEVVKLRSdASDLTWEVKM--DGRR----LTHGWEKFATGHCLKVGDIVIFRHDGDL 97
                    444.89*********9877765444...235778776888*******..9998....***********************88753 PP
2B360.92.2e-19146238397
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      + +++++lk++ l lp +f +++g +++e  +++l++e+ + W++ ++y k+ g ++++ GW++F++an+ +++D+++Fkl++ +++++v++++
  XP_009135996.1 146 VARVTESNLKKDALFLPQHFSRANGFVNRE-CEIILMNEDREPWTLLMKYYKTNGYVYIRHGWRSFCQANRKRANDVLTFKLVQ-TGTKPVLQLR 238
                     56689999****************888655.59*************************************************98.7777888876 PP
3B338.12.8e-12257345190
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                     f++ +++ + lks+ l+lp +f+ ++g+k+ +  +++l d++g + +  l+ + k gr+ l++G  +F+ a g+k+g+++ ++l+++ +e 
  XP_009135996.1 257 FVTLTLKQYQLKSCKLCLPVPFVMANGIKNVR--EIILVDRHGVRRTTSLKPDDKYGRMRLGEGCIKFCIASGVKTGESFRLELIKEkEED 345
                     67778899******************999666..8********999999988999999**************************9874443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-196109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-199114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.77111107IPR003340B3 DNA binding domain
CDDcd100178.20E-1412104No hitNo description
SMARTSM010191.3E-1814107IPR003340B3 DNA binding domain
PfamPF023625.7E-82596IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-20137240IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.69E-22139242IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.62144240IPR003340B3 DNA binding domain
CDDcd100175.45E-21144238No hitNo description
SMARTSM010198.5E-25144241IPR003340B3 DNA binding domain
PfamPF023625.2E-18146238IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-12249343IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-12254343IPR015300DNA-binding pseudobarrel domain
CDDcd100171.62E-11256344No hitNo description
PfamPF023622.2E-10257346IPR003340B3 DNA binding domain
PROSITE profilePS508638.064257356IPR003340B3 DNA binding domain
SMARTSM010191.5E-14257357IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MANGSASSPI NPHFFQPLLP GFHSHINIPI AFYSKHIKGT TNEGYVNEVV KLRSDASDLT  60
WEVKMDGRRL THGWEKFATG HCLKVGDIVI FRHDGDLLFH VTPFGPSCCE IQYNDDDDDD  120
DDDHDEKYHQ QHTREAESSP DNSCFVARVT ESNLKKDALF LPQHFSRANG FVNRECEIIL  180
MNEDREPWTL LMKYYKTNGY VYIRHGWRSF CQANRKRAND VLTFKLVQTG TKPVLQLRAS  240
VYNRGSSSSS STSQDRFVTL TLKQYQLKSC KLCLPVPFVM ANGIKNVREI ILVDRHGVRR  300
TTSLKPDDKY GRMRLGEGCI KFCIASGVKT GESFRLELIK EKEEDTVNHL LKFSSKI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009135996.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894310.0AC189431.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068B07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135996.20.0PREDICTED: B3 domain-containing protein REM7-like
TrEMBLA0A3P6ABS10.0A0A3P6ABS1_BRACM; Uncharacterized protein
STRINGBo3g063950.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.14e-90B3 family protein