PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009135829.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 391aa    MW: 44567.6 Da    PI: 4.6458
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009135829.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.84.6e-35611532103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y+++ed+++++++sws+++nsf+v+d++ f+ ++Lp+ Fkh+nf+SFvRQLn+YgF+kv+ ++         weF++k F +g+k+ll++
  XP_009135829.1  61 FLTKTYDLVEDSRTNDVVSWSQDKNSFIVWDPQAFSMTLLPRSFKHNNFSSFVRQLNTYGFRKVNPDR---------WEFANKGFLRGQKHLLKT 146
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r+k++
  XP_009135829.1 147 ITRRKTN 153
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.9E-3456150IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.8E-5657150IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.2E-3757150IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.1E-186184IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.9E-3161150IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-1899111IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340100124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-18112124IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MDPSYTCIKE EFPTGINDSP SPPSSSTSSY LHSTSMAPND PATLNSPQPI EGLHESGPPP  60
FLTKTYDLVE DSRTNDVVSW SQDKNSFIVW DPQAFSMTLL PRSFKHNNFS SFVRQLNTYG  120
FRKVNPDRWE FANKGFLRGQ KHLLKTITRR KTNNNNQMQP PESSSQQQSL DNCCIEVGRY  180
GLEGEMDSLR RDKQVLMMEL VKLRKEQQST KMYLTLTEAK LKKTESKQHQ MMSFLARAMQ  240
NPDFLQQLVE HKDKSKDMEE AIRKKRQRTI DQGTSDVVNV EDCDVNVGGG SSSRFVDMKQ  300
DIYGDMPEFA MSELDGLAMH IEGLGGQFTG EEVLDVDKRE QEGFQNENNE SYGEDFLEGL  360
FKEDQDIDFE RDGENVDVLI EQLGYLGSSS H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-225215217131Heat shock factor protein 1
5d5v_B1e-225215217131Heat shock factor protein 1
5d5v_D1e-225215217131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251264KDKSKDMEEAIRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009135829.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893270.0AC189327.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB037A01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135829.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH80.0HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A3P5ZQ340.0A0A3P5ZQ34_BRACM; Uncharacterized protein
TrEMBLM4CCF50.0M4CCF5_BRARP; Uncharacterized protein
STRINGBra001885.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-180heat shock transcription factor A6B