PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009135555.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 259aa MW: 29946 Da PI: 8.3174 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.2 | 2.5e-12 | 18 | 110 | 3 | 99 |
EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 k l+p + ks ++ ++p +f+++ ++ + +++ ++++sW++ l r +++ +++++ W eFv++n L D++vF++++++ f v+ XP_009135555.1 18 KSLSPGQNWKSkSMRIIPEEFLRSTHES--FEHRVVFSVPWNNSWQLWL--RPDKKGlFMIKEDWDEFVNDNFLGPDDTLVFTHQDTMYF--QVR 106 55555555555255699*****998644..4457***************..8888888*************************9887888..999 PP EE-S CS B3 96 vfrk 99 +f+k XP_009135555.1 107 IFKK 110 9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.4E-15 | 13 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-15 | 14 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.40E-14 | 15 | 109 | No hit | No description |
SMART | SM01019 | 1.8E-12 | 16 | 111 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.955 | 17 | 111 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.7E-10 | 28 | 110 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.14E-9 | 158 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.3E-7 | 159 | 246 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.22 | 165 | 258 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 7.204 | 222 | 259 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MLPERKMQEC LNKSSFSKSL SPGQNWKSKS MRIIPEEFLR STHESFEHRV VFSVPWNNSW 60 QLWLRPDKKG LFMIKEDWDE FVNDNFLGPD DTLVFTHQDT MYFQVRIFKK DGKEIISAPL 120 EFEPQKETTS ASASASGRTA TRGRKSCANL QNPERYLLNP QNPYFTKTLK KTNHLLHVGH 180 PVIRQYGLEF GPHDSSMYFI LPDGNKVDGL TKYYNGLPNF LGWADVCQQY NLKIGDTVVC 240 EFELSGRVVA AVRVHFVNE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009135555.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009135555.1 | 0.0 | PREDICTED: B3 domain-containing protein At5g25470-like | ||||
Swissprot | Q680D9 | 3e-99 | Y5475_ARATH; B3 domain-containing protein At5g25475 | ||||
TrEMBL | A0A398A3Q5 | 0.0 | A0A398A3Q5_BRACM; Uncharacterized protein | ||||
STRING | Bo3g071320.1 | 1e-177 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4491 | 16 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25470.2 | 3e-95 | B3 family protein |