PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009135510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 287aa MW: 33183.1 Da PI: 10.282 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62 | 9.5e-20 | 19 | 111 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffk++ ++d +++++ +p +f+ ++ +k+ s+++++++++grsWev + + +++ y+ ++GW++Fv +n L +++fv+F+++g ++f +v XP_009135510.1 19 FFKIFHSADLSSESMRGIPYDFM-KNVSKEDFSRKMVIRTKWGRSWEVDI--SMNPRFyYMEKSGWNQFVTDNALGANEFVTFTHNGLMCF--NV 108 89***999***************.665677899*****************..999999566669********************9988999..66 PP EEE CS B3 95 kvf 97 ++ XP_009135510.1 109 NIY 111 665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-19 | 14 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.28E-18 | 15 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.42E-17 | 18 | 112 | No hit | No description |
PROSITE profile | PS50863 | 13.775 | 19 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.0E-18 | 19 | 111 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-23 | 19 | 114 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.96E-14 | 183 | 274 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.024 | 185 | 279 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.6E-11 | 185 | 275 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 5.6E-4 | 188 | 279 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MEWNRGFGRV KEERKSLSFF KIFHSADLSS ESMRGIPYDF MKNVSKEDFS RKMVIRTKWG 60 RSWEVDISMN PRFYYMEKSG WNQFVTDNAL GANEFVTFTH NGLMCFNVNI YKESGKEIVL 120 THTTTPFSGI KNEEGERSYK DVKKEDESMG GGVGHVEIGE SSRGAALRKK KAEKHKKRKK 180 VKYGVPRFKI TITKSYLRSL PIPTFFEKRY LKSESKVYKI HHSEGDGSWE VLSLVHQAHI 240 VLSRGWVKLA REYPLAIGDR CTFHLVKPTE FVLTSKKAKA IEITISD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 175 | 179 | KKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009135510.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009135510.1 | 0.0 | PREDICTED: B3 domain-containing protein At3g17010-like | ||||
Swissprot | Q9LSP6 | 5e-91 | Y3701_ARATH; B3 domain-containing protein At3g17010 | ||||
TrEMBL | M4CBR7 | 0.0 | M4CBR7_BRARP; Uncharacterized protein | ||||
STRING | Bra001647.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17010.1 | 2e-90 | B3 family protein |
Publications ? help Back to Top | |||
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