PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009135370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 352aa MW: 39550.9 Da PI: 4.6466 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.7 | 1.4e-18 | 115 | 164 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r ++ +g+W+AeIrdp++ r +lg+f taeeAa+a++aa+++++g XP_009135370.1 115 QYRGIRLRP-WGKWAAEIRDPRK---GSREWLGTFETAEEAARAYDAAARRIRG 164 69*******.**********954...39***********************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.65E-15 | 115 | 173 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-31 | 115 | 173 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-22 | 115 | 173 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.894 | 115 | 172 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-36 | 115 | 178 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.5E-12 | 116 | 164 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 116 | 127 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 138 | 154 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MCGGAIISEF IPPPKSRRVT SEFIWPDLKN LKKKSRKRSH FFDLDNEFEA DFKGFKDDDS 60 SFECEDGFDV KPFAFTAATK PVASLPTNVA STGSVSDKKA VESDEKSGKR KRKNQYRGIR 120 LRPWGKWAAE IRDPRKGSRE WLGTFETAEE AARAYDAAAR RIRGDKAKVN FPEEVISSPK 180 KPVAKPNQTP TLVQPPTHVS QYCNNNSFDS MGHDSLSFVE EKPQIYNNQF FDVGQYFNSD 240 QGSNSFDCSE FGWSDHAPKT PPEISSMVVN NNQATFAEQT IAAKKVKLNS EDETSDNDDL 300 MVYLDNALWE SPLEMEAMLG VDAAATGVAQ EEENPMELWS LDDINFMLDG DF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-21 | 115 | 175 | 2 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.8258 | 0.0 | bud| flower| leaf| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Constitutive in flowers, leaves, stems, and roots. {ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in carotenoid biosynthesis regulation. Binds to the 5'-ATCTA-3' element present in the promoter of phytoene synthase (PSY) and phytoene desaturase (PDS). Involved in ethylene response and resistance to necrotrophic pathogens. Acts as a downstream regulator in the ethylene signaling pathway. Partially redundant with RAP2-12. {ECO:0000269|PubMed:17873090, ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009135370.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by darkness, ethylene and Botrytis cinerea. {ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189253 | 0.0 | AC189253.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB019N06, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009135370.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-2-like isoform X1 | ||||
Swissprot | Q9LUM4 | 1e-147 | RAP22_ARATH; Ethylene-responsive transcription factor RAP2-2 | ||||
TrEMBL | M4CBG1 | 0.0 | M4CBG1_BRARP; Uncharacterized protein | ||||
STRING | Bra001541.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.3 | 1e-135 | related to AP2 2 |