PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009135277.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 431aa MW: 48220.6 Da PI: 5.7832 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.5 | 2.3e-31 | 233 | 287 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+F++ v++L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl XP_009135277.1 233 KPRMRWTPELHESFLKSVDKLEGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 287 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.961 | 230 | 290 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-29 | 231 | 288 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.34E-16 | 232 | 288 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.5E-24 | 233 | 288 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.1E-8 | 235 | 286 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.5E-22 | 323 | 370 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MNRHRLVSTA QDECNKGLGQ ACSSSLSPVH NFLNLQPENR NSPFIRSHSP DSPWPKNSPQ 60 GTFSRSSTFC TNLYISSSST SESQKHLGNT LPFLPDPSTN SQPPSAVESA RSPSIFSEDM 120 SNPFDGDNTL VKDFFNLSGD ACSDGAFHDL DCSNDSYCLS DQMELQFLSD ELELAITDRS 180 ETPRLDIYET PLASSSNPVT GLSQTQRSLS GGMSIEVVLS HPSPGSAAAS NHKPRMRWTP 240 ELHESFLKSV DKLEGPEKAT PKAVLKLMNV EGLTIYHVKS HLQKYRLAKH IPEKKEEKRN 300 VNTEEKKLAL SNNEAAERKK GAMQLTEALR MQMEVQKQLH EQLEVQRVLQ LRIEEHAKYL 360 EKMLEEQRKT GMLMSSSSSQ TSDCQNMSKT EVSSLSQPKN IASETEDDKC ESPQKRRKVE 420 NNTESEDPEE R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-23 | 233 | 290 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-23 | 233 | 290 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-23 | 233 | 290 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-23 | 233 | 290 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-23 | 233 | 290 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-23 | 233 | 290 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-23 | 233 | 290 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-23 | 233 | 290 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00354 | DAP | Transfer from AT3G13040 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009135277.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009135277.1 | 0.0 | PREDICTED: myb family transcription factor PHL6-like isoform X2 | ||||
Swissprot | Q949U2 | 0.0 | PHL6_ARATH; Myb family transcription factor PHL6 | ||||
TrEMBL | A0A398A173 | 0.0 | A0A398A173_BRACM; Uncharacterized protein | ||||
STRING | Bo3g065290.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 0.0 | G2-like family protein |
Publications ? help Back to Top | |||
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