PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009135261.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 303aa    MW: 34929.4 Da    PI: 9.1404
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009135261.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.89.1e-49221502128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      pGfrFhPtdeelv +yL kkv  kk  +++e+i+++diyk++PwdLp +++++eke yfF+kr +ky+++ r+nr+t sg+Wkatg dk+++s 
  XP_009135261.1  22 LPGFRFHPTDEELVGFYLSKKVLLKKpSKIDEIISHIDIYKFDPWDLP-RLRNTEKESYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSD 115
                     59*******************877764888889***************.7788899**************************************9 PP

             NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++++glkktLv+y g+a kg+ktdW+mhe+rl
  XP_009135261.1 116 gsSKSVIGLKKTLVYYVGSAGKGSKTDWMMHEFRL 150
                     666677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100550.67221185IPR003441NAC domain
SuperFamilySSF1019411.96E-5022185IPR003441NAC domain
PfamPF023651.9E-2423150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MMGSCDKRRG EQEEEEEQKL KLPGFRFHPT DEELVGFYLS KKVLLKKPSK IDEIISHIDI  60
YKFDPWDLPR LRNTEKESYF FCKRGRKYRN SIRPNRVTGS GFWKATGIDK PIYSDGSSKS  120
VIGLKKTLVY YVGSAGKGSK TDWMMHEFRL PTANDTIPGG STHLNPTPPA MLHAEVWTLC  180
RIFQRNVSSR KYTPDWRELA GGKRVKPQQS KYQEAYISFG DNESTISTNN INIMENKGNY  240
ERNVFQLHQT PHQHQPILMD TASTTQVDYT GPHSSNHDIH NITYENWDEL RSVVEFAFGP  300
SLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-44101915171NO APICAL MERISTEM PROTEIN
1ut4_B1e-44101915171NO APICAL MERISTEM PROTEIN
1ut7_A1e-44101915171NO APICAL MERISTEM PROTEIN
1ut7_B1e-44101915171NO APICAL MERISTEM PROTEIN
3swm_A2e-44101918174NAC domain-containing protein 19
3swm_B2e-44101918174NAC domain-containing protein 19
3swm_C2e-44101918174NAC domain-containing protein 19
3swm_D2e-44101918174NAC domain-containing protein 19
3swp_A2e-44101918174NAC domain-containing protein 19
3swp_B2e-44101918174NAC domain-containing protein 19
3swp_C2e-44101918174NAC domain-containing protein 19
3swp_D2e-44101918174NAC domain-containing protein 19
4dul_A1e-44101915171NAC domain-containing protein 19
4dul_B1e-44101915171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009135261.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266458e-90AB026645.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6.
GenBankCP0026868e-90CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135261.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK553e-71NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A398A4B80.0A0A398A4B8_BRACM; Uncharacterized protein
STRINGBo3g065200.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.11e-155NAC family protein
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]