PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009135252.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 253aa    MW: 29140 Da    PI: 7.8158
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009135252.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-163784148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+ eE e+l+  + ++G ++W++ ++  g++R++k+c++rw++yl
   XP_009135252.1 37 RGPWSDEESERLKAFILKHGHHNWRSLPKLAGLTRCGKSCRLRWLNYL 84
                     89********************************************97 PP

2Myb_DNA-binding53.55.6e-1790135148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
   XP_009135252.1  90 RGSFTKEEEDTIIHLHQVLGNK-WSKIASHLP-GRTDNEIKNVWNTHL 135
                      89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.8543284IPR017930Myb domain
SMARTSM007171.5E-123686IPR001005SANT/Myb domain
SuperFamilySSF466891.43E-2936131IPR009057Homeodomain-like
PfamPF002497.4E-153784IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-213891IPR009057Homeodomain-like
CDDcd001671.33E-83984No hitNo description
PROSITE profilePS5129425.25785139IPR017930Myb domain
SMARTSM007174.0E-1589137IPR001005SANT/Myb domain
PfamPF002496.6E-1690135IPR001005SANT/Myb domain
CDDcd001672.80E-1092135No hitNo description
Gene3DG3DSA:1.10.10.606.2E-2792138IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MCVYKHEYLK DSLKLRTMCV MGKRRTPCCD NSQVLKRGPW SDEESERLKA FILKHGHHNW  60
RSLPKLAGLT RCGKSCRLRW LNYLRPGLKR GSFTKEEEDT IIHLHQVLGN KWSKIASHLP  120
GRTDNEIKNV WNTHLKKRSM KSNSSASDVT NQASSVSSSS SSVSNDVINS EKHNQEEELE  180
NILVEHMACG FEVNAPQSLE FLFEDRQISP IPISKPESLE IHMQSHDELC SRMVEPGLDV  240
YNEWLSYFDN QTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25351385107B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cauline leaves and siliques. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in metal ions homeostasis, including iron ions (Fe) acquisition, via the regulation of NAS4 and NAS2 genes expression. Necessary for plant survival in alkaline soil where iron availability is greatly restricted. Triggers tolerance to nickel (Ni) and zinc (Zn) ions. {ECO:0000269|PubMed:24278034}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00352DAPTransfer from AT3G12820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009135252.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates strongly in the root stele and in the outer layers of the lateral roots when exposed to iron (Fe)-deficient conditions (PubMed:24278034). Slightly induced by ethylene and by darkness conditions (PubMed:9839469). Accumulates upon potassium (K) depletion (PubMed:15489280). Induced by zinc (Zn) and cadmium (Cd) ions (PubMed:18088336). {ECO:0000269|PubMed:15489280, ECO:0000269|PubMed:18088336, ECO:0000269|PubMed:24278034, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135252.10.0PREDICTED: myb-related protein Myb4-like
SwissprotQ9LTV41e-113MYB10_ARATH; Transcription factor MYB10
TrEMBLA0A398A0Z90.0A0A398A0Z9_BRACM; Uncharacterized protein
STRINGBra001472.1-P1e-173(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140961624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12820.11e-113myb domain protein 10
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]