PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009135207.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 235aa MW: 24711.7 Da PI: 10.0948 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.3 | 9.5e-07 | 33 | 56 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F+H XP_009135207.1 33 KSKPCTKFFSTSGCPFGENCHFSH 56 7789******************** PP | |||||||
2 | zf-CCCH | 33.8 | 5.8e-11 | 200 | 225 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+ C +f++ G C +GdrC+FaHg+ XP_009135207.1 200 FKTKMCERFSK-GSCTFGDRCHFAHGE 225 69*********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.112 | 31 | 59 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.22 | 31 | 58 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-6 | 32 | 58 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.0E-5 | 33 | 56 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-7 | 33 | 56 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 3.65E-15 | 92 | 173 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.1E-14 | 102 | 171 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 4.6E-10 | 102 | 172 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.508 | 103 | 167 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 5.6E-11 | 105 | 169 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 5.24E-12 | 105 | 167 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 4.7E-16 | 194 | 229 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.446 | 199 | 226 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-8 | 199 | 229 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-6 | 199 | 225 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-7 | 200 | 225 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MDTLKRGRPE ANSNGGGFKK SKQEMESTGL GSKSKPCTKF FSTSGCPFGE NCHFSHYVPG 60 GYNAVAQLTN MAPPMPQVSR NMQGSGGGGR FSGPGHVSSF GASATAKISV DASLAGAIIG 120 KGGVSSKQIY RQTGAKLTIQ DHERDPNLKN IELEGTFEQI NEASVMVREL IGRLNSAARR 180 PPGGGGGIGS EGKPHPGSNF KTKMCERFSK GSCTFGDRCH FAHGEAELRR SGIPS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.2690 | 4e-84 | flower| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009135207.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353531 | 0.0 | AK353531.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-B10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009135207.1 | 1e-172 | PREDICTED: zinc finger CCCH domain-containing protein 36-like | ||||
Swissprot | Q9C7C3 | 1e-136 | C3H36_ARATH; Zinc finger CCCH domain-containing protein 36 | ||||
TrEMBL | M4CB57 | 1e-171 | M4CB57_BRARP; Uncharacterized protein | ||||
STRING | Bra001436.1-P | 1e-171 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2336 | 28 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 1e-122 | C3H family protein |
Publications ? help Back to Top | |||
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