PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009135145.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 341aa MW: 39199.7 Da PI: 9.6167 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51 | 2.6e-16 | 34 | 114 | 13 | 98 |
TT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 13 sgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++ l +p f+++h + +++++ ++l++ s +Wevk+ ++++ lt+GW++F+ +++L++gD+v+F++d +f l+v++f XP_009135145.1 34 HSHLNIPVAFFSKHfeQTQNHGNAVVRLRSdASDVTWEVKM--DGRR----LTQGWQKFAASHDLRVGDIVIFRHD--GDFLLHVSFFG 114 44599*********98666678889999987888*******..9998....***********************65..58989998886 PP | |||||||
2 | B3 | 61.3 | 1.6e-19 | 141 | 232 | 6 | 99 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++++l+++++ lp +f + +g+ +++ +++l +e++++W++ +++ k sg++ +++GWk+F+ +n+ +++Df++Fkl++ +++++v++++++ XP_009135145.1 141 VTASNLSTDMVHLPMDFSRYNGLT-NRNCEIILLNEESKQWRLLMRHHKASGHVCIRSGWKRFCYENRRRANDFLTFKLVR-NGATPVLQLCSS 232 68899999*********9777776.5677**************************************************98.88889***9986 PP | |||||||
3 | B3 | 51.2 | 2.3e-16 | 244 | 340 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 + ++++++lks+ l+lp kf++++g+++++ ++tl d++g++ + l+ k gr l+k WkeF++ n++k+g+++ ++l+++ ++++ ++k XP_009135145.1 244 VILTLTPYSLKSSTLRLPMKFVKANGIENAR--KITLVDRHGNKKTTSLKQFDKYGRLSLGKEWKEFCEVNKVKTGESFKLELIKEeDTGTHLLK 336 5567799******************988555..8********9999999876667899**************************99899999999 PP EE-S CS B3 96 vfrk 99 +++k XP_009135145.1 337 FCSK 340 9886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.8E-21 | 17 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.47E-20 | 21 | 123 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.196 | 22 | 116 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.62E-16 | 23 | 113 | No hit | No description |
SMART | SM01019 | 3.8E-21 | 25 | 116 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-10 | 34 | 113 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.5E-20 | 131 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.08E-19 | 132 | 234 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.70E-17 | 136 | 230 | No hit | No description |
PROSITE profile | PS50863 | 13.38 | 136 | 233 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.3E-25 | 137 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-18 | 140 | 232 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-17 | 238 | 339 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-17 | 241 | 339 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.06E-11 | 242 | 328 | No hit | No description |
SMART | SM01019 | 3.6E-23 | 243 | 341 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.8E-16 | 243 | 340 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.041 | 243 | 340 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 341 aa Download sequence Send to blast |
MRSLTFTRKR SSTSMATSSP MNPHFFKPLL LGFHSHLNIP VAFFSKHFEQ TQNHGNAVVR 60 LRSDASDVTW EVKMDGRRLT QGWQKFAASH DLRVGDIVIF RHDGDFLLHV SFFGPSCCEI 120 RYNHDDDDDD DDDDSSFVAC VTASNLSTDM VHLPMDFSRY NGLTNRNCEI ILLNEESKQW 180 RLLMRHHKAS GHVCIRSGWK RFCYENRRRA NDFLTFKLVR NGATPVLQLC SSSSSSTTRP 240 CRFVILTLTP YSLKSSTLRL PMKFVKANGI ENARKITLVD RHGNKKTTSL KQFDKYGRLS 300 LGKEWKEFCE VNKVKTGESF KLELIKEEDT GTHLLKFCSK V |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009135145.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189431 | 0.0 | AC189431.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068B07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009135145.1 | 0.0 | PREDICTED: B3 domain-containing protein REM8-like isoform X2 | ||||
TrEMBL | A0A398A0Q2 | 0.0 | A0A398A0Q2_BRACM; Uncharacterized protein | ||||
STRING | Bra001387.1-P | 1e-159 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G31680.1 | 2e-87 | B3 family protein |