PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009135144.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 344aa    MW: 39554.2 Da    PI: 9.6167
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009135144.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3512.7e-16341141398
                     TT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  13 sgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     ++ l +p  f+++h  + +++++  ++l++  s  +Wevk+  ++++    lt+GW++F+ +++L++gD+v+F++d   +f l+v++f 
  XP_009135144.1  34 HSHLNIPVAFFSKHfeQTQNHGNAVVRLRSdASDVTWEVKM--DGRR----LTQGWQKFAASHDLRVGDIVIFRHD--GDFLLHVSFFG 114
                     44599*********98666678889999987888*******..9998....***********************65..58989998886 PP
2B3567.4e-181462351199
                     HHTT-E...E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  11 lksgrl...vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     l+++++    lp +f + +g+  +++ +++l +e++++W++ +++ k sg++ +++GWk+F+ +n+ +++Df++Fkl++ +++++v++++++
  XP_009135144.1 146 LSTDMVilqHLPMDFSRYNGLT-NRNCEIILLNEESKQWRLLMRHHKASGHVCIRSGWKRFCYENRRRANDFLTFKLVR-NGATPVLQLCSS 235
                     4444333336899999777766.5677**************************************************98.88889***9986 PP
3B351.12.4e-16247343299
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                     +  ++++++lks+ l+lp kf++++g+++++  ++tl d++g++ +  l+   k gr  l+k WkeF++ n++k+g+++ ++l+++ ++++ ++k
  XP_009135144.1 247 VILTLTPYSLKSSTLRLPMKFVKANGIENAR--KITLVDRHGNKKTTSLKQFDKYGRLSLGKEWKEFCEVNKVKTGESFKLELIKEeDTGTHLLK 339
                     5567799******************988555..8********9999999876667899**************************99899999999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +++k
  XP_009135144.1 340 FCSK 343
                     9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-2117118IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-2021123IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.19622116IPR003340B3 DNA binding domain
CDDcd100172.40E-1623113No hitNo description
SMARTSM010193.8E-2125116IPR003340B3 DNA binding domain
PfamPF023621.5E-1034113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-18131235IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.55E-17132237IPR015300DNA-binding pseudobarrel domain
CDDcd100179.24E-16136233No hitNo description
SMARTSM010197.5E-21137236IPR003340B3 DNA binding domain
PfamPF023621.1E-16142235IPR003340B3 DNA binding domain
PROSITE profilePS5086312.224156236IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-17241342IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-17244342IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-11245331No hitNo description
SMARTSM010193.6E-23246344IPR003340B3 DNA binding domain
PfamPF023628.9E-16246343IPR003340B3 DNA binding domain
PROSITE profilePS5086312.041246343IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MRSLTFTRKR SSTSMATSSP MNPHFFKPLL LGFHSHLNIP VAFFSKHFEQ TQNHGNAVVR  60
LRSDASDVTW EVKMDGRRLT QGWQKFAASH DLRVGDIVIF RHDGDFLLHV SFFGPSCCEI  120
RYNHDDDDDD DDDDSSFVAC VTASNLSTDM VILQHLPMDF SRYNGLTNRN CEIILLNEES  180
KQWRLLMRHH KASGHVCIRS GWKRFCYENR RRANDFLTFK LVRNGATPVL QLCSSSSSST  240
TRPCRFVILT LTPYSLKSST LRLPMKFVKA NGIENARKIT LVDRHGNKKT TSLKQFDKYG  300
RLSLGKEWKE FCEVNKVKTG ESFKLELIKE EDTGTHLLKF CSKV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009135144.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894310.0AC189431.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068B07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135144.10.0PREDICTED: B3 domain-containing protein REM8-like isoform X1
TrEMBLA0A398A0Q20.0A0A398A0Q2_BRACM; Uncharacterized protein
STRINGBra001387.1-P1e-157(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.11e-85B3 family protein