PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009135113.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 421aa    MW: 47568.3 Da    PI: 5.702
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009135113.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.49.8e-52271541128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l+pGfrFhPtdeelv++yLk+kv g+++++ ++i +vdiyk+ePwdL   +++k++++ewyf++  dkky +g r nr+t+ gyWkatgkd+e+ 
  XP_009135113.1  27 LAPGFRFHPTDEELVSYYLKRKVLGRPVRF-DAIGDVDIYKYEPWDLAvfSRLKTRDQEWYFYCALDKKYGNGARMNRSTNIGYWKATGKDREIR 120
                     579************************999.99**************8544899999************************************** PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +  ++  g+kktLvf++grap+g +t+Wvmheyrl
  XP_009135113.1 121 R-ADQILGMKKTLVFHSGRAPDGLRTNWVMHEYRL 154
                     9.8999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-5820178IPR003441NAC domain
PROSITE profilePS5100555.58827178IPR003441NAC domain
PfamPF023651.5E-2629154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MDRGSVAAES SPSTATAPST AVAATALAPG FRFHPTDEEL VSYYLKRKVL GRPVRFDAIG  60
DVDIYKYEPW DLAVFSRLKT RDQEWYFYCA LDKKYGNGAR MNRSTNIGYW KATGKDREIR  120
RADQILGMKK TLVFHSGRAP DGLRTNWVMH EYRLVDYETE SNGNLVQDAY VLVKVFHKKN  180
IGPPSANRYA PFIEEEWADD GVVRVRAEPL PVANGNNQMG ESESKELINI NETPREATPM  240
DMEVNHQENA LKPQENNNNN NNHCDEDEKA LKREHADEVE CPPPPPLPLL QYKRRRQNES  300
NNKNSSRTTP ESSTTTTLIS SSAAATSTAI SALLEFSLMD ISEKKPLHKE GSPPTPLPSP  360
EEKMLNDLHK EIHEMSVERE TFKLEMMSAE AMISILQSRI DALRQENDEL KKNSDKGQGT  420
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-432618016167NO APICAL MERISTEM PROTEIN
1ut4_B1e-432618016167NO APICAL MERISTEM PROTEIN
1ut7_A1e-432618016167NO APICAL MERISTEM PROTEIN
1ut7_B1e-432618016167NO APICAL MERISTEM PROTEIN
3swm_A1e-432618019170NAC domain-containing protein 19
3swm_B1e-432618019170NAC domain-containing protein 19
3swm_C1e-432618019170NAC domain-containing protein 19
3swm_D1e-432618019170NAC domain-containing protein 19
3swp_A1e-432618019170NAC domain-containing protein 19
3swp_B1e-432618019170NAC domain-containing protein 19
3swp_C1e-432618019170NAC domain-containing protein 19
3swp_D1e-432618019170NAC domain-containing protein 19
4dul_A1e-432618016167NAC domain-containing protein 19
4dul_B1e-432618016167NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009135113.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667530.0KC966753.1 Brassica napus NAC transcription factor 51 (NAC51.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135112.10.0PREDICTED: NAC domain-containing protein 78-like
RefseqXP_009135113.10.0PREDICTED: NAC domain-containing protein 78-like
SwissprotQ9SQX90.0NAC50_ARATH; NAC domain containing protein 50
TrEMBLM4CAY70.0M4CAY7_BRARP; Uncharacterized protein
STRINGBra001366.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.10.0NAC domain containing protein 50
Publications ? help Back to Top
  1. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]