PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009134879.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 723aa    MW: 80685.5 Da    PI: 8.2113
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009134879.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.45.4e-18341440198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k+l+ sd+++ gr+vlpkk+ae++  +++++ ++ lt+ d++g++W++++++  +++s++y+l+ G     ++ +L++gD+v+F++++  e++
  XP_009134879.1 341 FEKILSVSDAGRVGRMVLPKKCAEAFlpQISQTDGVPLTVHDSTGKEWTFQFRFwvNNNSRMYFLE-GITPCIQSMQLQAGDTVIFSRVD-PEKK 433
                     89**************************88899999****************99888888889888.********************776.5555 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     l +++++
  XP_009134879.1 434 LIMGFRK 440
                     6666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-28337445IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.97E-20338440IPR015300DNA-binding pseudobarrel domain
CDDcd100173.20E-21339440No hitNo description
PfamPF023623.5E-15341440IPR003340B3 DNA binding domain
PROSITE profilePS5086311.237341442IPR003340B3 DNA binding domain
SMARTSM010191.2E-15341442IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MLPFPSSSSS MTPSSYSARF CFNRECPDFN RECYRPGWRL RNGDFADLCN RCATAYEQGR  60
FCDIFHQRAS GWRCCESCGK RIHCGCVVSA PAFTLLDAGG IECLTCARKK VSVGPNFRPP  120
PPSFLFQSPI ADKFQDLSID WNSSTRSYRP PNLSGPSILQ SDLHNRGDCY EFNQPTSKDK  180
ATAYSTEKHR GMNDLMGRLM SVNSNNHTNS ILYNQKAGPN CKVPTCPNVN AYPPLISLKE  240
GPLGAQRAFP VTTPVETNGH LGLGGRYLWH KDNSSPLSHL HNDVNRGADS PLESKNWNFG  300
IHLDTPGKYQ VVPRYSPKIP YKNQVLQNLS NESVSVVTPL FEKILSVSDA GRVGRMVLPK  360
KCAEAFLPQI SQTDGVPLTV HDSTGKEWTF QFRFWVNNNS RMYFLEGITP CIQSMQLQAG  420
DTVIFSRVDP EKKLIMGFRK ASVAQSSVQE TELNNNRESC TNGDAEPIDI HPPNGKKKSS  480
MTTTRSKRQK VEKGELSEVK LTWEEAQGFI LPPPNLTPSI ITIEGIEFEE YEDAPIIGKP  540
NTGFGSTCSA NGRLLAEQDD EEAKDEAEGL LMSPKSSSKH PRHRNGCTCI VCLQSPSGSS  600
PKHGRRCSCT VCDTVRRRRE TLLQRKKKQQ QIEVENKTHK ELESPNSDEE RHQSANNSGT  660
TSKDHEPSKA QIDLNFQPEK DEESPPPRSK TTTKDKSLHH DEASFKPPRS SSSAHNKLHV  720
ESF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-513164441127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1615626RRRRETLLQRKK
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in plant development. {ECO:0000269|PubMed:17158584}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009134879.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0322981e-47KF032298.1 Leavenworthia alabamica pop-variant Russellville self-incompatibility gene locus, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134879.10.0PREDICTED: B3 domain-containing transcription factor VAL3 isoform X3
SwissprotO654200.0VAL3_ARATH; B3 domain-containing transcription factor VAL3
TrEMBLM4DAM50.0M4DAM5_BRARP; Uncharacterized protein
STRINGBra013535.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.10.0VP1/ABI3-like 3