PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009134871.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 724aa MW: 80813.7 Da PI: 8.2113 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.4 | 5.4e-18 | 341 | 440 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k+l+ sd+++ gr+vlpkk+ae++ +++++ ++ lt+ d++g++W++++++ +++s++y+l+ G ++ +L++gD+v+F++++ e++ XP_009134871.1 341 FEKILSVSDAGRVGRMVLPKKCAEAFlpQISQTDGVPLTVHDSTGKEWTFQFRFwvNNNSRMYFLE-GITPCIQSMQLQAGDTVIFSRVD-PEKK 433 89**************************88899999****************99888888889888.********************776.5555 PP .EEEEE- CS B3 92 lvvkvfr 98 l +++++ XP_009134871.1 434 LIMGFRK 440 6666554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.6E-28 | 337 | 445 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.97E-20 | 338 | 440 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.21E-21 | 339 | 440 | No hit | No description |
PROSITE profile | PS50863 | 11.237 | 341 | 442 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-15 | 341 | 442 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.5E-15 | 341 | 440 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 724 aa Download sequence Send to blast |
MLPFPSSSSS MTPSSYSARF CFNRECPDFN RECYRPGWRL RNGDFADLCN RCATAYEQGR 60 FCDIFHQRAS GWRCCESCGK RIHCGCVVSA PAFTLLDAGG IECLTCARKK VSVGPNFRPP 120 PPSFLFQSPI ADKFQDLSID WNSSTRSYRP PNLSGPSILQ SDLHNRGDCY EFNQPTSKDK 180 ATAYSTEKHR GMNDLMGRLM SVNSNNHTNS ILYNQKAGPN CKVPTCPNVN AYPPLISLKE 240 GPLGAQRAFP VTTPVETNGH LGLGGRYLWH KDNSSPLSHL HNDVNRGADS PLESKNWNFG 300 IHLDTPGKYQ VVPRYSPKIP YKNQVLQNLS NESVSVVTPL FEKILSVSDA GRVGRMVLPK 360 KCAEAFLPQI SQTDGVPLTV HDSTGKEWTF QFRFWVNNNS RMYFLEGITP CIQSMQLQAG 420 DTVIFSRVDP EKKLIMGFRK ASVAQSSVQE TELNNNRESC TNGDQAEPID IHPPNGKKKS 480 SMTTTRSKRQ KVEKGELSEV KLTWEEAQGF ILPPPNLTPS IITIEGIEFE EYEDAPIIGK 540 PNTGFGSTCS ANGRLLAEQD DEEAKDEAEG LLMSPKSSSK HPRHRNGCTC IVCLQSPSGS 600 SPKHGRRCSC TVCDTVRRRR ETLLQRKKKQ QQIEVENKTH KELESPNSDE ERHQSANNSG 660 TTSKDHEPSK AQIDLNFQPE KDEESPPPRS KTTTKDKSLH HDEASFKPPR SSSSAHNKLH 720 VESF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 1e-51 | 316 | 444 | 1 | 127 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 616 | 627 | RRRRETLLQRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in plant development. {ECO:0000269|PubMed:17158584}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009134871.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF032298 | 1e-47 | KF032298.1 Leavenworthia alabamica pop-variant Russellville self-incompatibility gene locus, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009134871.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VAL3 isoform X1 | ||||
Refseq | XP_018515499.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VAL3 isoform X2 | ||||
Swissprot | O65420 | 0.0 | VAL3_ARATH; B3 domain-containing transcription factor VAL3 | ||||
TrEMBL | M4DAM5 | 0.0 | M4DAM5_BRARP; Uncharacterized protein | ||||
STRING | Bra013535.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6857 | 25 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21550.1 | 0.0 | VP1/ABI3-like 3 |