PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009134601.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 358aa MW: 39355.3 Da PI: 5.681 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 89.9 | 4.5e-28 | 56 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....... 77 lp+G++F+Ptd +++ e+L++k+ + e v ++v+i++++P++Lp ++++ + +f +k+ ++y tg+rk+r+ XP_009134601.1 56 LPKGVKFEPTDADII-EFLEAKCGIGGsephvlI---EefirpVTEDVGINYTHPKNLP-GTNKDGVSAFFVHKTVQAYGTGQRKRRKitptcln 145 799************.9*****876664566552...13445467889***********.4455566889999**************75565554 PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 + +W++tg++k+v+ +g + g+kk++v+yk + +k+ek++Wv+h+y+l XP_009134601.1 146 EEPVRWHKTGRNKHVFL-NGVNRGCKKIMVLYKSarKGSKPEKSKWVLHQYHL 197 44788************.999***********5433666778*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.49E-33 | 42 | 215 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.212 | 56 | 215 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-11 | 57 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MASAAWIVDG PGIASKVKNA SLSSALQTRD CGASIQCPNC YHRIDNTNVL VPWPGLPKGV 60 KFEPTDADII EFLEAKCGIG GSEPHVLIEE FIRPVTEDVG INYTHPKNLP GTNKDGVSAF 120 FVHKTVQAYG TGQRKRRKIT PTCLNEEPVR WHKTGRNKHV FLNGVNRGCK KIMVLYKSAR 180 KGSKPEKSKW VLHQYHLGTE GNEIGEYVVS KVTYQKEKVK DEGESSGVRG GPTTPMTNTP 240 TPPRPVDGGA GDGEAFDDDK MFDPFYEGLD SIPEAALWSK KARREEEVGV NLSEDNLTCN 300 ESIEASSPWE KNQILPNPSL GELDGFALSD LENVDLGTPP DFLTLASQDS LMNWMGWL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot and root apical meristems, in lateral root primordia, in the vasculature of young leaves and in the root stele. {ECO:0000269|PubMed:23907539}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009134601.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATAC009325 | 2e-63 | AC009325.8 Arabidopsis thaliana chromosome III BAC F4P13 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 2e-63 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009134601.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 | ||||
Refseq | XP_013735630.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like | ||||
Swissprot | Q6NQK2 | 2e-67 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | M4C9X1 | 0.0 | M4C9X1_BRARP; Uncharacterized protein | ||||
STRING | Bra001000.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5045 | 26 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 0.0 | NAC domain containing protein 44 |