PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009134265.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 156aa    MW: 17474.2 Da    PI: 8.7071
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009134265.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof111.54e-352077461
          zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                     a+ cprC+s+ntkfCyynnys sqPry Ck+CrryWt+GG+lrnvP+Gg+ rk k++
  XP_009134265.1 20 PARVCPRCNSDNTKFCYYNNYSASQPRYKCKNCRRYWTHGGTLRNVPIGGTGRKIKRN 77
                    5789**************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-241676IPR003851Zinc finger, Dof-type
PfamPF027012.3E-312276IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.3262276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010154Biological Processfruit development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000032Biological Processregulation of secondary shoot formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MDYSGLFVQE DNQANEEKPP ARVCPRCNSD NTKFCYYNNY SASQPRYKCK NCRRYWTHGG  60
TLRNVPIGGT GRKIKRNSFP PMDALHISDV SFQQGYYDAG SSDLIDNPLV KQLTGGSVVV  120
SSNQEDPNMW NQSFNNTTNM NHNASTSGGK GHISKH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009134265.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728781e-49AC172878.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH069E01, complete sequence.
GenBankAC2410201e-49AC241020.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039B11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134257.16e-54PREDICTED: dof zinc finger protein DOF4.4-like
TrEMBLA0A398AKN61e-52A0A398AKN6_BRACM; Uncharacterized protein
TrEMBLM4DAI41e-52M4DAI4_BRARP; Uncharacterized protein
STRINGBra013494.1-P2e-53(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.11e-37Dof-type zinc finger domain-containing protein