PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009134246.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 226aa    MW: 25454.3 Da    PI: 8.6232
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009134246.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof43.18.8e-1421532961
          zf-Dof 29 PryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                    Pr   ++Crr+Wt+GGalr++P+Gg +rk k++
  XP_009134246.1 21 PRVCPRNCRRFWTHGGALRDIPIGGRARKIKRT 53
                    88888************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.4E-111452IPR003851Zinc finger, Dof-type
ProDomPD0074780.0023152IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDKLSVIVKG DHQVNEEKPP PRVCPRNCRR FWTHGGALRD IPIGGRARKI KRTSIDQPSV  60
SQVTSVIQQV NHHQPFSHVR ETNEFLEPFC GSSSSVAVGN HFSSLPEIHG DMVFPIQTIP  120
PMDRFDLFDG SFNQGYYGVG FNDMVGNPLM NQSIGGHVDN YNSYRVNQEN PNKRNQSFNN  180
SMNMNHNAST SGSRGYPGID HMTNNNNKDR NKCVFSSSYH LEKYGP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009134246.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134239.11e-163PREDICTED: dof zinc finger protein DOF4.4-like
SwissprotQ9SUA92e-53DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLA0A398AKU61e-161A0A398AKU6_BRACM; Uncharacterized protein
TrEMBLM4DAI31e-161M4DAI3_BRARP; Uncharacterized protein
STRINGBra013493.1-P1e-162(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.11e-41Dof-type zinc finger domain-containing protein