PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009134228.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 217aa MW: 24604.2 Da PI: 9.1172 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 43.4 | 7.3e-14 | 21 | 53 | 29 | 61 |
zf-Dof 29 PryfCkaCrryWtkGGalrnvPvGggrrknkks 61 Pr ++Crr+Wt+GGalr+vP+Gg +rk k+ XP_009134228.1 21 PRVCPRNCRRFWTHGGALRDVPIGGRARKIKHI 53 88888************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 3.7E-11 | 15 | 52 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MDNSNVVVRG NRQVNEEKPP PRVCPRNCRR FWTHGGALRD VPIGGRARKI KHIDQPSVSQ 60 VVPDEIQQVN HHQPFSHVQE TTQFLEPFGG SSSSAVVGNH FSSLPETHGD MMLPTRSIPP 120 MDLFDGLFHQ GYYGAGLNNF VGNHLMNQSI GGHVDNYNSY RVNQENPNMR NQSFTNTMIM 180 NHNVGTSERR GYPRIDHMIN NNNNNNNNKS VFRSSYH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009134228.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009134228.1 | 1e-160 | PREDICTED: dof zinc finger protein DOF4.3-like isoform X2 | ||||
Swissprot | Q9SUA9 | 4e-43 | DOF44_ARATH; Dof zinc finger protein DOF4.4 | ||||
TrEMBL | A0A398ARP3 | 1e-146 | A0A398ARP3_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DAI2 | 1e-146 | M4DAI2_BRARP; Uncharacterized protein | ||||
STRING | Bra013492.1-P | 1e-147 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21050.1 | 2e-37 | Dof-type zinc finger domain-containing protein |