PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009134224.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 299aa    MW: 32740.4 Da    PI: 4.6894
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009134224.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-1998149255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdps    r   r +lg+++taeeAa  +++a+ +l+g
  XP_009134224.1  98 KYRGVRQRP-WGKWAAEIRDPSR---RvpVRLWLGTYDTAEEAAIVYDNAAIQLRG 149
                     8********.**********843...368*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.0E-2997157IPR001471AP2/ERF domain
PROSITE profilePS5103223.84198157IPR001471AP2/ERF domain
PfamPF008474.9E-1398149IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-2098157IPR016177DNA-binding domain
CDDcd000182.56E-3198156No hitNo description
SMARTSM003805.8E-3598163IPR001471AP2/ERF domain
PRINTSPR003671.4E-1099110IPR001471AP2/ERF domain
PRINTSPR003671.4E-10123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEAEKNVVKL SEHNIMTATT VTQPRILRIS VSDPYATDSS SDEEEDFADI SRKRRRVKKC  60
INEVVLESTV SDKDRPKKKK RPNTKTTAST AVTAPARKYR GVRQRPWGKW AAEIRDPSRR  120
VPVRLWLGTY DTAEEAAIVY DNAAIQLRGP NALTNFSPPA TENGEEASKE MDGVSDITTS  180
GGVECLGSPV SVLQTPFSGE STAATTVKEE FSGVSKTAVE VKEEPSLTVS DTFTGFSSPL  240
FLHDDVFGFP TTMPDCFGDE FFADMSFGFG SGSGFSSWHV EDHFQDIGDL FGSDPLLTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2194165170ATERF1
3gcc_A5e-2194165170ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15155RKRRR
25158RKRRRVKK
35256KRRRV
47379DRPKKKK
57581PKKKKRP
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009134224.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134224.10.0PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor CRF1
SwissprotO825031e-109CRF1_ARATH; Ethylene-responsive transcription factor CRF1
TrEMBLA0A397ZYM30.0A0A397ZYM3_BRACM; Uncharacterized protein
STRINGBo3g045150.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.11e-104cytokinin response factor 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]