PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009134143.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 224aa MW: 25011 Da PI: 9.4544 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.3 | 3.5e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++ +G g+W++ ++ g+ R++k+c++rw +yl XP_009134143.1 14 KGAWTKEEDQRLIDYIRIHGEGSWRSLPKSAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 54.1 | 3.6e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ eEd+ +++++ +lG++ W++Ia +++ gRt++++k++w+++ XP_009134143.1 67 RGNFSDEEDKVIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.7E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.999 | 9 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.33E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.1E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.23E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.232 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-27 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.33E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDQRLIDYIR IHGEGSWRSL PKSAGLLRCG KSCRLRWINY 60 LRPDLKRGNF SDEEDKVIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLSHG 120 IDPQTHRPIK DSIAVENSFT VRPKTENSSG NVASTSGTTT DEDIRQNGDC YYNDNSGEKE 180 VNLDLTLGSG STSLVRSGGR SGNGSSADSK PWWDPVMAAR LSLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-30 | 14 | 116 | 7 | 108 | B-MYB |
1h8a_C | 4e-30 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, flower buds, and siliques. {ECO:0000269|PubMed:9839469}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009134143.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232509 | 0.0 | AC232509.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061C02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009134143.1 | 1e-164 | PREDICTED: transcription repressor MYB6 | ||||
Swissprot | Q38851 | 1e-129 | MYB6_ARATH; Transcription repressor MYB6 | ||||
TrEMBL | A0A398A5S6 | 1e-163 | A0A398A5S6_BRACM; Uncharacterized protein | ||||
TrEMBL | M4C902 | 1e-163 | M4C902_BRARP; Uncharacterized protein | ||||
STRING | Bra000680.1-P | 1e-164 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 1e-122 | myb domain protein 6 |