PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009134082.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 322aa MW: 37280.9 Da PI: 6.5693 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 2e-09 | 248 | 283 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++e+ LA+++gL+++q+ +WF N+R ++ XP_009134082.1 248 YKWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 283 5679*****************************885 PP | |||||||
2 | ELK | 36.2 | 1.3e-12 | 203 | 224 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsgyL+sLkqE+s XP_009134082.1 203 ELKNHLLKKYSGYLSSLKQELS 224 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.8E-22 | 55 | 99 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.8E-22 | 57 | 98 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.1E-26 | 107 | 158 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.7E-24 | 112 | 157 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 11.243 | 203 | 223 | IPR005539 | ELK domain |
Pfam | PF03789 | 6.1E-10 | 203 | 224 | IPR005539 | ELK domain |
SMART | SM01188 | 1.0E-6 | 203 | 224 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 13.021 | 223 | 286 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 9.84E-20 | 224 | 298 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.0E-13 | 225 | 290 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-27 | 228 | 289 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.88E-11 | 235 | 287 | No hit | No description |
Pfam | PF05920 | 8.7E-17 | 243 | 282 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 261 | 284 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001708 | Biological Process | cell fate specification | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MEEYQHESRS TPHRPTNASV KSEASSSRIN HYSMLMKAIH NTQEANNNNN NNDMESMKAK 60 IIAHPHYSTL LHAYLDCQKI GAPPEVVDKI TAARQEFEAR QQRPTASVTA LSRDPELDQF 120 MEAYCDMLVK YREELTRPIE EAMEYIRRIE SQISMLCQGP IHILNNPDGK SEGMESSDEE 180 QDNNNSGGEA ELPEIDPRAE DRELKNHLLK KYSGYLSSLK QELSKKKKKG KLPKEARQKL 240 LTWWELHYKW PYPSESEKVA LAESTGLDQK QINNWFINQR KRHWKPSEDM QFMVMDGLQH 300 PHHAALYMDG HYMGDGPYRL GP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.17796 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the vegetative meristem. Present in the base of flower primordia (PubMed:26390296). {ECO:0000269|PubMed:12900451, ECO:0000269|PubMed:26390296, ECO:0000269|PubMed:7866029}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in meristem function, and may be involved in maintaining cells in an undifferentiated, meristematic state, and its expression disappears at the same time the shoot apex undergoes the transition from vegetative to reproductive development (PubMed:11934861). Positive regulator of LATERAL ORGAN BOUNDARIES (LOB) (PubMed:11934861). Probably binds to the DNA sequence 5'-TGAC-3' (PubMed:11934861). Able to traffic from the L1 to the L2/L3 layers of the meristem, presumably through plasmodesmata (PubMed:12900451). {ECO:0000269|PubMed:11934861, ECO:0000269|PubMed:12900451, ECO:0000269|PubMed:7866029}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009134082.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by ASYMMETRIC LEAVES1 (AS1) and ASYMMETRIC LEAVES2 (AS2). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATU14174 | 0.0 | U14174.1 Arabidopsis thaliana clone KNAT1 knotted-like homeobox protein gene, partial cds. | |||
GenBank | AY080834 | 0.0 | AY080834.1 Arabidopsis thaliana putative KNAT1 homeobox protein (At4g08150) mRNA, complete cds. | |||
GenBank | AY113982 | 0.0 | AY113982.1 Arabidopsis thaliana putative KNAT1 homeobox protein (At4g08150) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009134082.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 1 isoform X2 | ||||
Refseq | XP_013680901.1 | 0.0 | homeobox protein knotted-1-like 1 isoform X2 | ||||
Swissprot | P46639 | 0.0 | KNAT1_ARATH; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | A0A398A1D8 | 0.0 | A0A398A1D8_BRACM; Uncharacterized protein | ||||
TrEMBL | M4C8W0 | 0.0 | M4C8W0_BRARP; Uncharacterized protein | ||||
STRING | Bra000638.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 0.0 | KNOTTED-like from Arabidopsis thaliana |