PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009134081.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 387aa MW: 44670.6 Da PI: 6.555 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.7 | 2.3e-09 | 313 | 348 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++e+ LA+++gL+++q+ +WF N+R ++ XP_009134081.1 313 YKWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 348 5679*****************************885 PP | |||||||
2 | ELK | 35.9 | 1.6e-12 | 268 | 289 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsgyL+sLkqE+s XP_009134081.1 268 ELKNHLLKKYSGYLSSLKQELS 289 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.8E-22 | 120 | 164 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.4E-22 | 122 | 163 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.1E-26 | 172 | 223 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.2E-24 | 177 | 222 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 11.243 | 268 | 288 | IPR005539 | ELK domain |
SMART | SM01188 | 1.0E-6 | 268 | 289 | IPR005539 | ELK domain |
Pfam | PF03789 | 7.7E-10 | 268 | 289 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 13.021 | 288 | 351 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.37E-19 | 289 | 363 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.0E-13 | 290 | 355 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-27 | 293 | 354 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.49E-11 | 300 | 352 | No hit | No description |
Pfam | PF05920 | 1.1E-16 | 308 | 347 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 326 | 349 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001708 | Biological Process | cell fate specification | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MEEYQHESRS TPHRVSFLYS PISSSNKNDN TTTNNNNTNY GSGYNNTNNN NHQQHMLFPH 60 MSSLLPQTTE NCFRSDHDQP TNASVKSEAS SSRINHYSML MKAIHNTQEA NNNNNNNDME 120 SMKAKIIAHP HYSTLLHAYL DCQKIGAPPE VVDKITAARQ EFEARQQRPT ASVTALSRDP 180 ELDQFMEAYC DMLVKYREEL TRPIEEAMEY IRRIESQISM LCQGPIHILN NPDGKSEGME 240 SSDEEQDNNN SGGEAELPEI DPRAEDRELK NHLLKKYSGY LSSLKQELSK KKKKGKLPKE 300 ARQKLLTWWE LHYKWPYPSE SEKVALAEST GLDQKQINNW FINQRKRHWK PSEDMQFMVM 360 DGLQHPHHAA LYMDGHYMGD GPYRLGP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.17796 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the vegetative meristem. Present in the base of flower primordia (PubMed:26390296). {ECO:0000269|PubMed:12900451, ECO:0000269|PubMed:26390296, ECO:0000269|PubMed:7866029}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in meristem function, and may be involved in maintaining cells in an undifferentiated, meristematic state, and its expression disappears at the same time the shoot apex undergoes the transition from vegetative to reproductive development (PubMed:11934861). Positive regulator of LATERAL ORGAN BOUNDARIES (LOB) (PubMed:11934861). Probably binds to the DNA sequence 5'-TGAC-3' (PubMed:11934861). Able to traffic from the L1 to the L2/L3 layers of the meristem, presumably through plasmodesmata (PubMed:12900451). {ECO:0000269|PubMed:11934861, ECO:0000269|PubMed:12900451, ECO:0000269|PubMed:7866029}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009134081.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by ASYMMETRIC LEAVES1 (AS1) and ASYMMETRIC LEAVES2 (AS2). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATU14174 | 0.0 | U14174.1 Arabidopsis thaliana clone KNAT1 knotted-like homeobox protein gene, partial cds. | |||
GenBank | AY080834 | 0.0 | AY080834.1 Arabidopsis thaliana putative KNAT1 homeobox protein (At4g08150) mRNA, complete cds. | |||
GenBank | AY113982 | 0.0 | AY113982.1 Arabidopsis thaliana putative KNAT1 homeobox protein (At4g08150) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009134081.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 1 isoform X1 | ||||
Refseq | XP_013680900.1 | 0.0 | homeobox protein knotted-1-like 1 isoform X1 | ||||
Swissprot | P46639 | 0.0 | KNAT1_ARATH; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | A0A398A1D8 | 0.0 | A0A398A1D8_BRACM; Uncharacterized protein | ||||
TrEMBL | M4C8W0 | 0.0 | M4C8W0_BRARP; Uncharacterized protein | ||||
STRING | Bra000638.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6566 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 0.0 | KNOTTED-like from Arabidopsis thaliana |