PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133979.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 870aa    MW: 99100.7 Da    PI: 6.2181
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133979.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.71.8e-17155244196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f++ ++p+ + +++rl+lp+ f++e+g++  ++ ++++  ++g +W ++l  +kk+  + ++kGWkeFvkangL++g ++ ++  + +++++ ++
  XP_009133979.1 155 FVTFTLPPEYATLCRLTLPNLFVKENGIS--KPAEIRVLGKDGTKWPITLLLDKKG-IMSFGKGWKEFVKANGLETGFTLKLM--W-EDTTPSFS 243
                     6778889999****************999..5669***************777776.5689****************999999..5.55555555 PP

                     E CS
              B3  96 v 96 
                     +
  XP_009133979.1 244 L 244
                     5 PP
2B368.11.2e-21334426397
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      ++++ ++l s+ l+lp+ f++++g+   + ++++l d  grsW + l+++ +s+ ++++ GW++F++ ngL++g f++Fkl+g+ e+++v++++
  XP_009133979.1 334 VAFVTDSSLDSDTLYLPRYFTSSNGLTR-KCRKIVLIDGGGRSWAMDLSFNESSDIFYISPGWRSFCDKNGLQAGGFFTFKLVGN-EETPVLSFC 426
                     6788999999**************9986.557***************************************************95.555888777 PP
3B350.73.2e-16491581197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f++ ++p+d+ +++ l+lpk f++e+g +k++  ++ l  ++g +W  +l  +kk+  + l+kGWk+FvkangL++g +  +kl++ +++++ ++
  XP_009133979.1 491 FITFTLPPDYATLDKLTLPKLFVKENGFNKPG--EIYLLGKDGTKWLTRLLLDKKG-LMRLGKGWKDFVKANGLESGFT--LKLIW-EDATPSFS 579
                     778889********************999766..8***************776665.568****************955..55557.66667666 PP

                     EE CS
              B3  96 vf 97 
                     ++
  XP_009133979.1 580 LC 581
                     65 PP
4B344.82.2e-14646740199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f++  +++ +l+ +r++lp +f+++  ++k++   + l  ++  +W  +l ++ ++gr+ l+kGW  F+k+n+ k+g++v+++ ++ ++++++++
  XP_009133979.1 646 FLTLAITPTSLRCNRMRLPIPFLRKSCMDKPG--VIYLLGKDDTKWMANL-IQEGDGRMKLGKGWTAFAKENEFKAGESVTLESIW-EDETPMIR 736
                     667778999999*************9666555..7***************.58888899************************999.88889*99 PP

                     EE-S CS
              B3  96 vfrk 99 
                     ++r+
  XP_009133979.1 737 FLRT 740
                     9986 PP
5B343.36.7e-14774865296
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                     ++ ++++   k ++l+lp +f++++g++k +  ++tl de+  + + +l    + g +  ++GW eF++ang+k g++++++ +++ +e+ +v+k
  XP_009133979.1 774 VTLTLKHEDVKACMLILPSQFLKANGINKLG--KITLLDENEVELSAYL--LSREGIVAVESGWGEFCEANGVKLGESFTLECIKEqDETAPVLK 864
                     55566777778899************99766..8***************..88888899***********************9988788878777 PP

                     E CS
              B3  96 v 96 
                     v
  XP_009133979.1 865 V 865
                     6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-12996IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.6159101IPR003340B3 DNA binding domain
SuperFamilySSF1019361.45E-111097IPR015300DNA-binding pseudobarrel domain
CDDcd100173.34E-101096No hitNo description
SMARTSM010191.2E-712101IPR003340B3 DNA binding domain
CDDcd100171.18E-15153246No hitNo description
Gene3DG3DSA:2.40.330.102.0E-15153239IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.35E-15153238IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-21155248IPR003340B3 DNA binding domain
PROSITE profilePS5086312.534155248IPR003340B3 DNA binding domain
PfamPF023621.5E-15155245IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-21327427IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-23329427IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.298332428IPR003340B3 DNA binding domain
CDDcd100177.12E-19332427No hitNo description
SMARTSM010193.2E-27333429IPR003340B3 DNA binding domain
PfamPF023621.2E-19333426IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-16485572IPR015300DNA-binding pseudobarrel domain
CDDcd100179.60E-16489582No hitNo description
Gene3DG3DSA:2.40.330.102.6E-15490574IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.6E-23491584IPR003340B3 DNA binding domain
PROSITE profilePS5086313.253491584IPR003340B3 DNA binding domain
PfamPF023621.0E-14491581IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.8E-15636747IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-16643743IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.9E-19646741IPR003340B3 DNA binding domain
PROSITE profilePS5086312.562646741IPR003340B3 DNA binding domain
PfamPF023623.1E-13646740IPR003340B3 DNA binding domain
CDDcd100171.64E-12651739No hitNo description
Gene3DG3DSA:2.40.330.109.0E-14769859IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.61E-14771856IPR015300DNA-binding pseudobarrel domain
CDDcd100174.15E-11772855No hitNo description
PROSITE profilePS5086310.109773869IPR003340B3 DNA binding domain
SMARTSM010199.7E-17773869IPR003340B3 DNA binding domain
PfamPF023624.3E-13773865IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 870 aa     Download sequence    Send to blast
MAKSTTLLSP QFFHTLLPGF QTHLTIPSDF FSNYIKDLET TTAELKSDSS LDITWKVKLT  60
GRILNDGWGD FAVANNLHIG NVVLVRYEGG IVFHVSDLGP CFSQIQHINP PRQNIDEEDD  120
VERERKGDES LIKKKLKPKQ RPVSYSSYSP CHKRFVTFTL PPEYATLCRL TLPNLFVKEN  180
GISKPAEIRV LGKDGTKWPI TLLLDKKGIM SFGKGWKEFV KANGLETGFT LKLMWEDTTP  240
SFSLCCPESA SDRDEKECLE SIKKQSLSID RRIRDKPGKD DNNKEEKRSW ERQKIHLRGR  300
DVGDFEEVPI NKKVKTDSHG TEAAFSSLDN SCFVAFVTDS SLDSDTLYLP RYFTSSNGLT  360
RKCRKIVLID GGGRSWAMDL SFNESSDIFY ISPGWRSFCD KNGLQAGGFF TFKLVGNEET  420
PVLSFCPMES IDSRSQKDCF EAHSTEVSNE EEEIERERNE EETLMDIEEK KSKPEQRPVS  480
YSSYSPCYKR FITFTLPPDY ATLDKLTLPK LFVKENGFNK PGEIYLLGKD GTKWLTRLLL  540
DKKGLMRLGK GWKDFVKANG LESGFTLKLI WEDATPSFSL CCAESTSDKN EEEYLETIMK  600
QSLSIDRRIR DKISKDENDK EEKRSWEREK INMRGRDSTT SRQKQFLTLA ITPTSLRCNR  660
MRLPIPFLRK SCMDKPGVIY LLGKDDTKWM ANLIQEGDGR MKLGKGWTAF AKENEFKAGE  720
SVTLESIWED ETPMIRFLRT ESESSKANKK ESIYMEDTES RTRDSSTEIH ARFVTLTLKH  780
EDVKACMLIL PSQFLKANGI NKLGKITLLD ENEVELSAYL LSREGIVAVE SGWGEFCEAN  840
GVKLGESFTL ECIKEQDETA PVLKVMFSGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009133979.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133979.10.0PREDICTED: B3 domain-containing protein REM13-like
TrEMBLM4C8N60.0M4C8N6_BRARP; Uncharacterized protein
STRINGBra000564.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137801326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24650.10.0DNA binding;DNA binding;sequence-specific DNA binding transcription factors