PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133977.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 983aa    MW: 110238 Da    PI: 8.4579
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133977.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.31.6e-19126216498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      ++ +   +++rl+lp +f +e+g++k++  ++ l   +g +W  +l  + ++gr++ ++GWk+FvkangLk g++ +++l++ +++++v++++ 
  XP_009133977.1 126 FTLAPVDVRHCRLRLPMQFSRENGINKPG--KIYLLGNDGSKWLANL-LQESRGRMTVGDGWKSFVKANGLKIGESYTLELNW-EDTTPVLSLCP 216
                     5556667899**************99776..8***************.78999999*************************99.88889999986 PP
2B364.12.2e-20282372195
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f++ ++++d+l++grl+lp +f++e++++   + ++tl  ++g +W   l    ++gr+ l+kGWk+F+kangLk+gD+++++ ++ ++ ++v++
  XP_009133977.1 282 FLTLTITPDSLRHGRLRLPLEFMTENSMNR--PGDITLLGKDGAKWLASLL-LERRGRMCLGKGWKDFAKANGLKTGDSITLESIW-EDSTPVLR 372
                     778899********************9885..558***************6.55556778***********************999.55556665 PP
3B365.57.8e-215936771098
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       +++rl+lp +f++e+g++k++  ++ l  ++g +W  +l    ++gr++l++GWk+FvkangLk+g+++++kl++ +++++v++++ 
  XP_009133977.1 593 DVRNCRLRLPMQFTRENGINKPG--KIYLLGKDGSKWLANL-LLESRGRMTLGDGWKSFVKANGLKTGESFTLKLNW-EDTTPVLSLCP 677
                     5679**************99776..8***************.68888899*************************99.88889999986 PP
4B367.81.5e-21745836398
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     + ++++d+lk+grl+lp +f+++++++k++  ++tl  ++g +W v l    k+gr+ l+kGWk+F+kangLk+gD+++++ ++ +++++v++++
  XP_009133977.1 745 TLTITPDSLKHGRLRLPLEFMTDNSMNKPG--EITLLGKDGVKWLVSLL-LEKRGRMSLGKGWKDFAKANGLKTGDSITLESIW-ENATPVLSLL 835
                     56789*******************999766..8***************5.66667889***********************999.8888999888 PP

                     - CS
              B3  98 r 98 
                     r
  XP_009133977.1 836 R 836
                     7 PP
5B349.29.6e-16886971796
                     .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     ++   + + l lp +f++++g+ +++  ++tl  +sg +W  +l    k+g++ l++GWk+F++ang+ +g+++v++l+ ++++  v+k+
  XP_009133977.1 886 TPEGVRDCKLQLPSQFMRSNGIMNPG--KITLLGRSGMKWFAYL--LSKDGTIALENGWKGFCEANGVMVGESFVLELIPTQDADHVFKF 971
                     566678899***********877544..8***************..9999***************************9976666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-20121217IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-21121218IPR015300DNA-binding pseudobarrel domain
CDDcd100171.55E-16122216No hitNo description
PfamPF023622.5E-19123216IPR003340B3 DNA binding domain
SMARTSM010199.8E-29123218IPR003340B3 DNA binding domain
PROSITE profilePS5086314.649123218IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-21272373IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-22278373IPR015300DNA-binding pseudobarrel domain
CDDcd100179.85E-19282374No hitNo description
PfamPF023629.1E-20282373IPR003340B3 DNA binding domain
SMARTSM010191.0E-29282377IPR003340B3 DNA binding domain
PROSITE profilePS5086315.256282377IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.0E-22579681IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-22581681IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.3E-27584679IPR003340B3 DNA binding domain
PROSITE profilePS5086314.734584679IPR003340B3 DNA binding domain
CDDcd100171.57E-17588677No hitNo description
PfamPF023624.2E-20590677IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-20734841IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-23739834IPR015300DNA-binding pseudobarrel domain
CDDcd100172.26E-20742836No hitNo description
PROSITE profilePS5086315.763743838IPR003340B3 DNA binding domain
SMARTSM010195.2E-32743838IPR003340B3 DNA binding domain
PfamPF023625.1E-21744836IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-17872963IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-18874962IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.3E-18880975IPR003340B3 DNA binding domain
PROSITE profilePS5086312.943880975IPR003340B3 DNA binding domain
CDDcd100171.50E-13884972No hitNo description
PfamPF023621.8E-14885973IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 983 aa     Download sequence    Send to blast
MMFQVSDVGH RDVETPSSNN GQDNIGSMNK KHPYARQEAG FSSNHGDNQD NDELPRKRNY  60
SEAEKGSSSK HSCIVADATT ASSLHTYTPV FLTQDFTSLG GLKGKCDKKC SPKRIISSMG  120
TRFVTFTLAP VDVRHCRLRL PMQFSRENGI NKPGKIYLLG NDGSKWLANL LQESRGRMTV  180
GDGWKSFVKA NGLKIGESYT LELNWEDTTP VLSLCPTDHH SIGIRAEGEC SEASGNESLP  240
IRPSSGTEVI KYDNRKDESS SWEREKNHLR SRDSSSASQN RFLTLTITPD SLRHGRLRLP  300
LEFMTENSMN RPGDITLLGK DGAKWLASLL LERRGRMCLG KGWKDFAKAN GLKTGDSITL  360
ESIWEDSTPV LRLLHIESSD DRRQQGECSK ARDKESAFTE PSSGNKTRKL ESNREESRIY  420
PLTRLDSSLV NQNRFEISTL SPEIVRHGAH DYQIGEIVVF RDERDMMFQV SDLGPRFSVI  480
QNVLAPSSNS DQENIGSIST IRKETGFSIY DGDDQYNLEL PRKKKAKKNN PGTEAYSSPE  540
RSCFVAHVTA SNLHTDAPHL PQDFTSSNSP TQIVSSYLSS EKQVATFTLA PVDVRNCRLR  600
LPMQFTRENG INKPGKIYLL GKDGSKWLAN LLLESRGRMT LGDGWKSFVK ANGLKTGESF  660
TLKLNWEDTT PVLSLCPPEY SIDSREGGEC SETIEKEPLP IVLSCGKEIN KEDENRKRES  720
RSWERETNLL IWRDSTVLSQ NRCLTLTITP DSLKHGRLRL PLEFMTDNSM NKPGEITLLG  780
KDGVKWLVSL LLEKRGRMSL GKGWKDFAKA NGLKTGDSIT LESIWENATP VLSLLRVESS  840
NDSEVSKQSG NKTRKEENRS SSWELEKRRS SSSSEIQNRT VILTLTPEGV RDCKLQLPSQ  900
FMRSNGIMNP GKITLLGRSG MKWFAYLLSK DGTIALENGW KGFCEANGVM VGESFVLELI  960
PTQDADHVFK FYSNYGYHIH NKC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009133977.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133977.10.0PREDICTED: B3 domain-containing protein REM-like 1
SwissprotQ8S8E80.0REML1_ARATH; B3 domain-containing protein REM-like 1
TrEMBLA0A398A1540.0A0A398A154_BRACM; Uncharacterized protein
STRINGBra000563.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150791619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24690.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]