PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133833.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 429aa    MW: 45819.8 Da    PI: 8.8542
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133833.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.44.3e-124366427
                    ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                    + C++++rtG C yG+rC+++H+p
  XP_009133833.1 43 PDCPYYMRTGVCGYGSRCRYNHPP 66
                    78********************97 PP
2zf-CCCH413.2e-1387111327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+f+++tGtCk+G++CkF+H++
  XP_009133833.1  87 EPPCQFYLKTGTCKFGASCKFNHPR 111
                     79*********************96 PP
3zf-CCCH352.5e-11134158327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+++++tG Ck+G +CkF+H++
  XP_009133833.1 134 EKECSYYLKTGLCKFGITCKFHHPQ 158
                     689********************97 PP
4zf-CCCH36.39.5e-12279302427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      +C+++++tG Ck+G +CkF+H++
  XP_009133833.1 279 LECQYYLKTGDCKFGTSCKFHHPR 302
                     58********************96 PP
5zf-CCCH28.42.9e-09327347626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     C f+ ++G+Ck+G++CkF H+
  XP_009133833.1 327 CTFYIQNGFCKFGSTCKFDHP 347
                     ********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.3E-63966IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.9253967IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-94366IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-64467IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-54565IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-784111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.86384112IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-1087111IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-687112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-589111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.413131159IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-4133158IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8134158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-6135159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-4137157IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4275302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.967275303IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-9279302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6280304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-5281303IPR000571Zinc finger, CCCH-type
SMARTSM003560.0054321348IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.192321349IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5324348IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-6327347IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-4327346IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MDMYGRTPPS QSAHGNAADT GLEESMWRLG LGGETYPERP AAPDCPYYMR TGVCGYGSRC  60
RYNHPPDRAT VEATVRATGQ YPERIGEPPC QFYLKTGTCK FGASCKFNHP RNAGGSMSHV  120
PLNIYGYPVR EGGEKECSYY LKTGLCKFGI TCKFHHPQPA PAPAATPPPP ASAPQFYPSL  180
QQQQQSLIPG APSSSLRVAR TLLPGSYMQG AYGPMLLSPG VLPMQGWSPY SAPVSPALSP  240
GATSLYGVPH LSSTTPSLPG VYPSLPSPTH SFPERPGELE CQYYLKTGDC KFGTSCKFHH  300
PRHRVPPSAN CNLSPIGLPL RPGVQGCTFY IQNGFCKFGS TCKFDHPTGY NASSSSLPDA  360
PVSTLLGAPS STGLLSGAAR STSNISAGLI FSQSGGSIPF SDLQLSSQTS LPLTGSRITR  420
HGREIRRSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009133833.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133833.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like
RefseqXP_009133834.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A3P5ZK540.0A0A3P5ZK54_BRACM; Uncharacterized protein
STRINGBra000466.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein