PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009133791.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 310aa MW: 34824.8 Da PI: 7.6828 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 99.1 | 2.6e-31 | 33 | 138 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.s 88 f+kv tpsdv+k++rlv+pk++ae++ ++ +e++ l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F + ++ + XP_009133791.1 33 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSTNEKGLILNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFLRCvgDTgR 127 89***************************966777899************************************************943323356 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l++ ++r+ XP_009133791.1 128 DSRLFIDWRRR 138 77788888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.0E-41 | 27 | 140 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.54E-30 | 30 | 123 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.78E-26 | 31 | 118 | No hit | No description |
Pfam | PF02362 | 1.7E-28 | 33 | 138 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.395 | 33 | 139 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.4E-24 | 33 | 139 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MMTNLSLARE GEEEEEEAGA KKPTEEVERE HMFDKVVTPS DVGKLNRLVI PKQHAERYFP 60 LDSSTNEKGL ILNFEDLTGK SWRFRYSYWN SSQSYVMTKG WSRFVKDKKL DAGDIVSFLR 120 CVGDTGRDSR LFIDWRRRPK VPDYTTSTSH FPAGAMFPRF YSFQTATTST SYNPYNHQQP 180 RHHHSGYCYP QIPREFGYGY VVRSVDQRAV VADPLVIESV PVMMHGGARV NQAAVGTAGK 240 RLRLFGVDME CGESGGTNST EEESSSSGGS LPRGGASPSS SMFQLRLGNS SEDDHLFKKG 300 KSSLPFNLDQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 7e-77 | 28 | 141 | 3 | 116 | B3 domain-containing transcription factor NGA1 |
5os9_B | 7e-77 | 28 | 141 | 3 | 116 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.3701 | 0.0 | leaf| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009133791.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232491 | 0.0 | AC232491.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049N04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009133791.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor NGA1-like | ||||
Swissprot | O82799 | 1e-159 | NGA1_ARATH; B3 domain-containing transcription factor NGA1 | ||||
TrEMBL | M4C8A6 | 0.0 | M4C8A6_BRARP; Uncharacterized protein | ||||
STRING | Bra000434.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1307 | 28 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 1e-149 | B3 family protein |