PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009133785.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 369aa MW: 40532.5 Da PI: 8.2584 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.1 | 4e-38 | 75 | 136 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg+++knk+sss XP_009133785.1 75 PQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSKKNKRSSS 136 6899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 9.0E-27 | 74 | 126 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.3E-32 | 77 | 133 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.425 | 79 | 133 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 81 | 117 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MDATKWTQGF QDMMNVKPME QIMIPNNNTH QSNTMSDARP NTILTSNGVS AAGATVSGVS 60 NNNNTALVVE RKARPQEKVN CPRCNSTNTK FCYYNNYSLT QPRYFCKGCR RYWTEGGSLR 120 NVPVGGSSKK NKRSSSSSNI LQATPSSLGL TTTLPDLNPP ILFSNQIPNK SKGSSHDLNL 180 LSFPVMQDQN HHHHHGHMSQ FLQMPKMEGN GNITHQQPSS LHGSSSSPVS ALELLRTGGN 240 VSSRSGINSF MPSGPMLDSS NNVLYTSSGF PTMVDYKPSN LSFSTDHHQE MGHNNTSRSD 300 DHNDHNQGRI LFPFGDQMKE LTSSITQEVD HDDNQQQKSH GDNNNNSSSI PNTGYWSGMF 360 NTTGGGSSW |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the vascular system of the mother plant, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009133785.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232491 | 0.0 | AC232491.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049N04, complete sequence. | |||
GenBank | AC241033 | 0.0 | AC241033.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB045E05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009133785.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.5-like isoform X1 | ||||
Swissprot | Q9ZPY0 | 0.0 | DOF25_ARATH; Dof zinc finger protein DOF2.5 | ||||
TrEMBL | M4C8A1 | 0.0 | M4C8A1_BRARP; Uncharacterized protein | ||||
STRING | Bra000429.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2528 | 26 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46590.2 | 0.0 | Dof family protein |
Publications ? help Back to Top | |||
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