PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009133611.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Nin-like | ||||||||
Protein Properties | Length: 909aa MW: 100513 Da PI: 5.8645 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 91.3 | 7.3e-29 | 575 | 625 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l+++Fs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ XP_009133611.1 575 EKNVSLSVLQQHFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 625 89***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.768 | 564 | 645 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.3E-27 | 577 | 625 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 4.25E-23 | 799 | 894 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 2.4E-24 | 807 | 888 | No hit | No description |
SMART | SM00666 | 1.2E-25 | 809 | 891 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 23.091 | 809 | 891 | IPR000270 | PB1 domain |
CDD | cd06407 | 1.48E-36 | 810 | 890 | No hit | No description |
Pfam | PF00564 | 2.7E-18 | 810 | 890 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 909 aa Download sequence Send to blast |
MEHPFASRDK VFGYQDISTE EMDSFSFGSG VRSLISDDMF NSSSNSELVN FDSFSTWCNS 60 PSVSDVLFAQ YGLSTSQSMP FGAITSAHAP ELRAATLPGL TRSFHDMESS YYGEERPSLQ 120 EMISQFDHSL DSVQLSGKRR RVANQKNGFP NLMNCTIPRS LSHSLDEKML KALSLFLESS 180 GSGEGILAQV WTPIKIGDQH VLSTCDQAYL LDPRLSQYRE VSRKFTFASE ANQCSFPGLP 240 GRVFISGVPE WTSNVVYYKT DEYLRMKHAI DNEVRGSIAI PILEASGTTC CAVMELVTSK 300 EKPNFDTEMD SVCRALQAVN LRTSASPRPQ FLSSNQRDAL AEIQDVLRAV CHAHRLPLAL 360 AWIPCSYGKG GKNQSGVLCV EETACYVNDT EMEGFVHVCL EHCLREKEGI VGRAFVSNKP 420 LFSSDVKAYD ISEYPLVQHA RKYGLNAAVA IKLRSTYTGE DDYILELFLP VSMKGSLEQQ 480 LLLDSLSGTM QRICRTLRTV SDVGEAKKEV SKTGVLNACS GNFQTMLSDS ELNSTRNIFS 540 DMSSDKDNSS TGSQGTYEQD MSKARTPEKK KSTTEKNVSL SVLQQHFSGS LKDAAKSLGV 600 CPTTLKRICR QHGIMRWPSR KINKVNRSLR KIQTVLDSVQ GVEGGLKFDS ATGEFVAVCP 660 FIKELDTQKD PSSNVNNEHV RGHEDVAAQD ASFELLKAKS VDNEIKLEED IITNGSFMEV 720 NASGEQWAWM AEQSSFHCSE EKKNNGNLSS QAIRCSGSIN EPNHSLSCRM SGSSKGSGAV 780 MLRSSSTSMD DSNQVRTQKS NSSESGSTTL TVKATYREDT IRFKFEPSLG CSQLYKEVGK 840 RFKLQEESFQ LKYLDDEEEW VMLVTDSDLQ ECLEILYGMG KHTVKFLVRD LPAPIGSSAG 900 SNCYLGTGL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 141 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009133611.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018513351.1 | 0.0 | PREDICTED: protein NLP8-like isoform X3 | ||||
Swissprot | O22864 | 0.0 | NLP8_ARATH; Protein NLP8 | ||||
TrEMBL | M4C7X9 | 0.0 | M4C7X9_BRARP; Uncharacterized protein | ||||
STRING | Bra000307.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43500.2 | 0.0 | Nin-like family protein |
Publications ? help Back to Top | |||
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