PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009133610.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 917aa MW: 101261 Da PI: 5.8787

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009133610.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	80.6	1.6e-25	554	633	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLg.............................vclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l+++Fs+++kdAAk+Lg vc+T+LKriCRq+GI+RWP+Rki+++ XP_009133610.1 554 EKNVSLSVLQQHFSGSLKDAAKSLGgefstfsyvlmsfivgqtfltldfvsnlaVCPTTLKRICRQHGIMRWPSRKINKV 633 89****************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.878	543	653	IPR003035	RWP-RK domain
Pfam	PF02042	1.7E-24	556	633	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.25E-23	807	902	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.5E-24	815	896	No hit	No description
SMART	SM00666	1.2E-25	817	899	IPR000270	PB1 domain
PROSITE profile	PS51745	23.091	817	899	IPR000270	PB1 domain
CDD	cd06407	1.27E-36	818	898	No hit	No description
Pfam	PF00564	2.7E-18	818	898	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 917 aa Download sequence Send to blast
MDSFSFGSGV RSLISDDMFN SSSNSELVNF DSFSTWCNSP SVSDVLFAQY GLSTSQSMPF 60 GAITSAHAPE LRAATLPGLT RSFHDMESSY YGEERPSLQE MISQFDHSLD SVQLSGKRRR 120 VANQKNGFPN LMNCTIPRSL SHSLDEKMLK ALSLFLESSG SGEGILAQVW TPIKIGDQHV 180 LSTCDQAYLL DPRLSQYREV SRKFTFASEA NQCSFPGLPG RVFISGVPEW TSNVVYYKTD 240 EYLRMKHAID NEVRGSIAIP ILEASGTTCC AVMELVTSKE KPNFDTEMDS VCRALQAVNL 300 RTSASPRPQF LSSNQRDALA EIQDVLRAVC HAHRLPLALA WIPCSYGKGG KNQSGVLCVE 360 ETACYVNDTE MEGFVHVCLE HCLREKEGIV GRAFVSNKPL FSSDVKAYDI SEYPLVQHAR 420 KYGLNAAVAI KLRSTYTGED DYILELFLPV SMKGSLEQQL LLDSLSGTMQ RICRTLRTVS 480 DVGEAKKEVS KTGVLNACSG NFQTMLSDSE LNSTRNIFSD MSSDKDNSST GSQGTYEQDM 540 SKARTPEKKK STTEKNVSLS VLQQHFSGSL KDAAKSLGGE FSTFSYVLMS FIVGQTFLTL 600 DFVSNLAVCP TTLKRICRQH GIMRWPSRKI NKVNRSLRKI QTVLDSVQGV EGGLKFDSAT 660 GEFVAVCPFI KELDTQKDPS SNVNNEHVRG HEDVAAQDAS FELLKAKSVD NEIKLEEDII 720 TNGSFMEVNA SGEQWAWMAE QSSFHCSEEK KNNGNLSSQA IRCSGSINEP NHSLSCRMSG 780 SSKGSGAVML RSSSTSMDDS NQVRTQKSNS SESGSTTLTV KATYREDTIR FKFEPSLGCS 840 QLYKEVGKRF KLQEESFQLK YLDDEEEWVM LVTDSDLQEC LEILYGMGKH TVKFLVRDLP 900 APIGSSAGSN CYLGTGL

Sequence ? help Back to Top

Protein Sequence Length: 917 aa Download sequence Send to blast

MDSFSFGSGV RSLISDDMFN SSSNSELVNF DSFSTWCNSP SVSDVLFAQY GLSTSQSMPF  60
GAITSAHAPE LRAATLPGLT RSFHDMESSY YGEERPSLQE MISQFDHSLD SVQLSGKRRR  120
VANQKNGFPN LMNCTIPRSL SHSLDEKMLK ALSLFLESSG SGEGILAQVW TPIKIGDQHV  180
LSTCDQAYLL DPRLSQYREV SRKFTFASEA NQCSFPGLPG RVFISGVPEW TSNVVYYKTD  240
EYLRMKHAID NEVRGSIAIP ILEASGTTCC AVMELVTSKE KPNFDTEMDS VCRALQAVNL  300
RTSASPRPQF LSSNQRDALA EIQDVLRAVC HAHRLPLALA WIPCSYGKGG KNQSGVLCVE  360
ETACYVNDTE MEGFVHVCLE HCLREKEGIV GRAFVSNKPL FSSDVKAYDI SEYPLVQHAR  420
KYGLNAAVAI KLRSTYTGED DYILELFLPV SMKGSLEQQL LLDSLSGTMQ RICRTLRTVS  480
DVGEAKKEVS KTGVLNACSG NFQTMLSDSE LNSTRNIFSD MSSDKDNSST GSQGTYEQDM  540
SKARTPEKKK STTEKNVSLS VLQQHFSGSL KDAAKSLGGE FSTFSYVLMS FIVGQTFLTL  600
DFVSNLAVCP TTLKRICRQH GIMRWPSRKI NKVNRSLRKI QTVLDSVQGV EGGLKFDSAT  660
GEFVAVCPFI KELDTQKDPS SNVNNEHVRG HEDVAAQDAS FELLKAKSVD NEIKLEEDII  720
TNGSFMEVNA SGEQWAWMAE QSSFHCSEEK KNNGNLSSQA IRCSGSINEP NHSLSCRMSG  780
SSKGSGAVML RSSSTSMDDS NQVRTQKSNS SESGSTTLTV KATYREDTIR FKFEPSLGCS  840
QLYKEVGKRF KLQEESFQLK YLDDEEEWVM LVTDSDLQEC LEILYGMGKH TVKFLVRDLP  900
APIGSSAGSN CYLGTGL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	120	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009133610.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018513350.1	0.0	PREDICTED: protein NLP8-like isoform X2
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	M4C7X9	0.0	M4C7X9_BRARP; Uncharacterized protein
STRING	Bra000307.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]