PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009133609.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 938aa MW: 103730 Da PI: 5.678

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009133609.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	80.6	1.6e-25	575	654	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLg.............................vclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l+++Fs+++kdAAk+Lg vc+T+LKriCRq+GI+RWP+Rki+++ XP_009133609.1 575 EKNVSLSVLQQHFSGSLKDAAKSLGgefstfsyvlmsfivgqtfltldfvsnlaVCPTTLKRICRQHGIMRWPSRKINKV 654 89****************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.878	564	674	IPR003035	RWP-RK domain
Pfam	PF02042	1.7E-24	577	654	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.25E-23	828	923	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.6E-24	836	917	No hit	No description
SMART	SM00666	1.2E-25	838	920	IPR000270	PB1 domain
PROSITE profile	PS51745	23.091	838	920	IPR000270	PB1 domain
Pfam	PF00564	2.8E-18	839	919	IPR000270	PB1 domain
CDD	cd06407	1.42E-36	839	919	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 938 aa Download sequence Send to blast
MEHPFASRDK VFGYQDISTE EMDSFSFGSG VRSLISDDMF NSSSNSELVN FDSFSTWCNS 60 PSVSDVLFAQ YGLSTSQSMP FGAITSAHAP ELRAATLPGL TRSFHDMESS YYGEERPSLQ 120 EMISQFDHSL DSVQLSGKRR RVANQKNGFP NLMNCTIPRS LSHSLDEKML KALSLFLESS 180 GSGEGILAQV WTPIKIGDQH VLSTCDQAYL LDPRLSQYRE VSRKFTFASE ANQCSFPGLP 240 GRVFISGVPE WTSNVVYYKT DEYLRMKHAI DNEVRGSIAI PILEASGTTC CAVMELVTSK 300 EKPNFDTEMD SVCRALQAVN LRTSASPRPQ FLSSNQRDAL AEIQDVLRAV CHAHRLPLAL 360 AWIPCSYGKG GKNQSGVLCV EETACYVNDT EMEGFVHVCL EHCLREKEGI VGRAFVSNKP 420 LFSSDVKAYD ISEYPLVQHA RKYGLNAAVA IKLRSTYTGE DDYILELFLP VSMKGSLEQQ 480 LLLDSLSGTM QRICRTLRTV SDVGEAKKEV SKTGVLNACS GNFQTMLSDS ELNSTRNIFS 540 DMSSDKDNSS TGSQGTYEQD MSKARTPEKK KSTTEKNVSL SVLQQHFSGS LKDAAKSLGG 600 EFSTFSYVLM SFIVGQTFLT LDFVSNLAVC PTTLKRICRQ HGIMRWPSRK INKVNRSLRK 660 IQTVLDSVQG VEGGLKFDSA TGEFVAVCPF IKELDTQKDP SSNVNNEHVR GHEDVAAQDA 720 SFELLKAKSV DNEIKLEEDI ITNGSFMEVN ASGEQWAWMA EQSSFHCSEE KKNNGNLSSQ 780 AIRCSGSINE PNHSLSCRMS GSSKGSGAVM LRSSSTSMDD SNQVRTQKSN SSESGSTTLT 840 VKATYREDTI RFKFEPSLGC SQLYKEVGKR FKLQEESFQL KYLDDEEEWV MLVTDSDLQE 900 CLEILYGMGK HTVKFLVRDL PAPIGSSAGS NCYLGTGL

Sequence ? help Back to Top

Protein Sequence Length: 938 aa Download sequence Send to blast

MEHPFASRDK VFGYQDISTE EMDSFSFGSG VRSLISDDMF NSSSNSELVN FDSFSTWCNS  60
PSVSDVLFAQ YGLSTSQSMP FGAITSAHAP ELRAATLPGL TRSFHDMESS YYGEERPSLQ  120
EMISQFDHSL DSVQLSGKRR RVANQKNGFP NLMNCTIPRS LSHSLDEKML KALSLFLESS  180
GSGEGILAQV WTPIKIGDQH VLSTCDQAYL LDPRLSQYRE VSRKFTFASE ANQCSFPGLP  240
GRVFISGVPE WTSNVVYYKT DEYLRMKHAI DNEVRGSIAI PILEASGTTC CAVMELVTSK  300
EKPNFDTEMD SVCRALQAVN LRTSASPRPQ FLSSNQRDAL AEIQDVLRAV CHAHRLPLAL  360
AWIPCSYGKG GKNQSGVLCV EETACYVNDT EMEGFVHVCL EHCLREKEGI VGRAFVSNKP  420
LFSSDVKAYD ISEYPLVQHA RKYGLNAAVA IKLRSTYTGE DDYILELFLP VSMKGSLEQQ  480
LLLDSLSGTM QRICRTLRTV SDVGEAKKEV SKTGVLNACS GNFQTMLSDS ELNSTRNIFS  540
DMSSDKDNSS TGSQGTYEQD MSKARTPEKK KSTTEKNVSL SVLQQHFSGS LKDAAKSLGG  600
EFSTFSYVLM SFIVGQTFLT LDFVSNLAVC PTTLKRICRQ HGIMRWPSRK INKVNRSLRK  660
IQTVLDSVQG VEGGLKFDSA TGEFVAVCPF IKELDTQKDP SSNVNNEHVR GHEDVAAQDA  720
SFELLKAKSV DNEIKLEEDI ITNGSFMEVN ASGEQWAWMA EQSSFHCSEE KKNNGNLSSQ  780
AIRCSGSINE PNHSLSCRMS GSSKGSGAVM LRSSSTSMDD SNQVRTQKSN SSESGSTTLT  840
VKATYREDTI RFKFEPSLGC SQLYKEVGKR FKLQEESFQL KYLDDEEEWV MLVTDSDLQE  900
CLEILYGMGK HTVKFLVRDL PAPIGSSAGS NCYLGTGL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	141	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009133609.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018513349.1	0.0	PREDICTED: protein NLP8-like isoform X1
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	M4C7X9	0.0	M4C7X9_BRARP; Uncharacterized protein
STRING	Bra000307.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]