PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009133606.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 892aa MW: 98482.5 Da PI: 5.4279

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009133606.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90	1.9e-28	575	625	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l+++Fs+++kdAAk+Lgvc+T+LKr CRq+GI+RWP+Rki+++ XP_009133606.1 575 EKNVSLSVLQQHFSGSLKDAAKSLGVCPTTLKRXCRQHGIMRWPSRKINKV 625 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.586	564	645	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-26	577	625	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.77E-23	782	877	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.0E-25	790	871	No hit	No description
SMART	SM00666	1.0E-25	792	874	IPR000270	PB1 domain
PROSITE profile	PS51745	23.437	792	874	IPR000270	PB1 domain
CDD	cd06407	8.01E-36	793	873	No hit	No description
Pfam	PF00564	1.8E-18	793	873	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 892 aa Download sequence Send to blast
MEHPFASRDK VFGYQDISTE EMDSFSFGSG VRSLISDDMF NSSSNSELVN FDSFSTWCNS 60 PSVSDVLFAQ YGLSTSQSMP FGAITSAHAP ELRAATLPGL TRSFHDMESS YYGEERPSLQ 120 EMISQFDHSL DSVQLSGKRR RVANQKNGFP NLMNCTIPRS LSHSLDEKML KALSLFLESS 180 GSGEGILAQV WTPIKIGDQH VLSTCDQAYL LDPRLSQYRE VSRKFTFASE ANQCSFPGLP 240 GRVFISGVPE WTSNVVYYKT DEYLRMKHAI DNEVRGSIAI PILEASGTTC CAVMELVTSK 300 EKPNFDTEMD SVCRALQAVN LRTSASPRPQ FLSSNQRDAL AEIQDVLRAV CHAHRLPLAL 360 AWIPCSYGKG GKNQSGVLCV EETACYVNDT EMEGFVHVCL EHCLREKEGI VGRAFVSNKP 420 LFSSDVKAYD ISEYPLVQHA RKYGLNAAVA IKLRSTYTGE DDYILELFLP VSMKGSLEQQ 480 LLLDSLSGTM QRICRTLRTV SDIGEAKKEV SKTGVLTACS GNFQTMLSDS ELNSTRNIFS 540 DMSSDKDSSG TGSQGTYEQD MSKARTPEKK KSTTEKNVSL SVLQQHFSGS LKDAAKSLGV 600 CPTTLKRXCR QHGIMRWPSR KINKVNRSLR KIQTVLDSVQ GVEGGLKFDS TTGEFVAVCP 660 FIKELDTQKD PVRGQEDTAQ DTSFELLEAK SVDNAIKLEE DIIANGSFVE VDASGQQWAW 720 MAEQSGFNGN LSSQAIRCSG SINEPNQSMS CSMSGSSNGS GAVMLRSSST SMDDSNQVRT 780 QKSNSSESGS TTLTVKATYR EDTIRFKFEP SLGCSQLYKE VRKRFKLQEE SFQLKYLDDE 840 EEWVMLVTDS DLQECLEILY GMGKHTVKFL VRDLPAPIGS SAGSNCYLGT GL

Sequence ? help Back to Top

Protein Sequence Length: 892 aa Download sequence Send to blast

MEHPFASRDK VFGYQDISTE EMDSFSFGSG VRSLISDDMF NSSSNSELVN FDSFSTWCNS  60
PSVSDVLFAQ YGLSTSQSMP FGAITSAHAP ELRAATLPGL TRSFHDMESS YYGEERPSLQ  120
EMISQFDHSL DSVQLSGKRR RVANQKNGFP NLMNCTIPRS LSHSLDEKML KALSLFLESS  180
GSGEGILAQV WTPIKIGDQH VLSTCDQAYL LDPRLSQYRE VSRKFTFASE ANQCSFPGLP  240
GRVFISGVPE WTSNVVYYKT DEYLRMKHAI DNEVRGSIAI PILEASGTTC CAVMELVTSK  300
EKPNFDTEMD SVCRALQAVN LRTSASPRPQ FLSSNQRDAL AEIQDVLRAV CHAHRLPLAL  360
AWIPCSYGKG GKNQSGVLCV EETACYVNDT EMEGFVHVCL EHCLREKEGI VGRAFVSNKP  420
LFSSDVKAYD ISEYPLVQHA RKYGLNAAVA IKLRSTYTGE DDYILELFLP VSMKGSLEQQ  480
LLLDSLSGTM QRICRTLRTV SDIGEAKKEV SKTGVLTACS GNFQTMLSDS ELNSTRNIFS  540
DMSSDKDSSG TGSQGTYEQD MSKARTPEKK KSTTEKNVSL SVLQQHFSGS LKDAAKSLGV  600
CPTTLKRXCR QHGIMRWPSR KINKVNRSLR KIQTVLDSVQ GVEGGLKFDS TTGEFVAVCP  660
FIKELDTQKD PVRGQEDTAQ DTSFELLEAK SVDNAIKLEE DIIANGSFVE VDASGQQWAW  720
MAEQSGFNGN LSSQAIRCSG SINEPNQSMS CSMSGSSNGS GAVMLRSSST SMDDSNQVRT  780
QKSNSSESGS TTLTVKATYR EDTIRFKFEP SLGCSQLYKE VRKRFKLQEE SFQLKYLDDE  840
EEWVMLVTDS DLQECLEILY GMGKHTVKFL VRDLPAPIGS SAGSNCYLGT GL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	141	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009133606.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018513351.1	0.0	PREDICTED: protein NLP8-like isoform X3
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	M4C7X9	0.0	M4C7X9_BRARP; Uncharacterized protein
STRING	Bra000307.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]