PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133535.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 306aa    MW: 34985.7 Da    PI: 6.1887
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133535.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1331.3e-10180223548
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                     kr +r   NR +A+rsR+RK+++i eLe+ + +L++e + L  +
  XP_009133535.1 180 KRVKRILANRQSAQRSRARKLQYISELERSITSLQSEVSVLSPR 223
                     8999********************************98777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.9E-13176240IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.611178230IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.0E-13180231No hitNo description
PfamPF001701.9E-8180223IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.3E-11180234No hitNo description
CDDcd147033.67E-22181231No hitNo description
PROSITE patternPS000360183198IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAQLPPKIPN MTPHWPDFSQ KLSHFPTVAA SSAVQNPSWV DEFLDFSACR RGNHRRSISD  60
SIAFLEAPIV TSNMEEHNFD KFDDEQFMSM FTEDDDDLRN NPSHNNKNVG PSGCSLNTST  120
QADHKSFNDD EEPPSDHYMK DTNNNRNDEV RSQCKTEPED GTASSNNSGD SSSNRIIDPK  180
RVKRILANRQ SAQRSRARKL QYISELERSI TSLQSEVSVL SPRVAFLDHQ RLLLNVDNSA  240
LKQRIAALAQ DKIFKDTHQE SLKREIERLR QVYQQQSFKK MENANHLPET GVDIKLSIEK  300
EQMLNI
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in vascular tissues of leaves, stems and siliques, anthers, filaments, tapetum, mature pollen grains, pistil vascular tissues and papillar cells, and funiculi. {ECO:0000269|PubMed:19449183}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development. May play a role in the control of metabolic pathways regulating cellular transport and lipid metabolism. {ECO:0000269|PubMed:17719007, ECO:0000269|PubMed:19449183}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009133535.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2411040.0AC241104.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH017L09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133535.10.0PREDICTED: basic leucine zipper 34-like
SwissprotF4IN231e-151BZP34_ARATH; Basic leucine zipper 34
TrEMBLA0A3N6R2D10.0A0A3N6R2D1_BRACR; Uncharacterized protein
STRINGBra000256.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17532777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42380.21e-136bZIP family protein
Publications ? help Back to Top
  1. Jiang J,Zhang Z,Cao J
    Pollen wall development: the associated enzymes and metabolic pathways.
    Plant Biol (Stuttg), 2013. 15(2): p. 249-63
    [PMID:23252839]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]