PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009133437.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 192aa MW: 20673.5 Da PI: 8.1215

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009133437.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.9	1.3e-41	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq++ l++el XP_009133437.1 13 PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQSELT 107 7*********************************************************************************************9 PP DUF260 96 llkee 100 ++++ XP_009133437.1 108 AVRSA 112 99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.69	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.5E-42	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MSGPPGTLNT ITPCAACKLL RRRCAQECPF SPYFSPHEPH KFASVHKVFG ASNVSKMLME 60 VPESQRADAA NSLVYEANVR LRDPVYGCMG AISALQQQVQ ALQSELTAVR SAILKYKQRE 120 AVATLILPSN SQVAGFHNSS GVSVIAPPPQ TPSTPPQPTV APPPPSSCVF SQPTTRALEY 180 SDIENENNSY FG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-44	5	116	3	114	LOB family transfactor Ramosa2.1
5ly0_B	5e-44	5	116	3	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009133437.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ446613	0.0	DQ446613.1 Arabidopsis thaliana clone pENTR221-At2g40470 LOB domain protein 15/lateral organ boundaries domain protein 15 (At2g40470) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009133436.1	1e-139	PREDICTED: LOB domain-containing protein 15 isoform X1
Refseq	XP_009133437.1	1e-139	PREDICTED: LOB domain-containing protein 15 isoform X2
Refseq	XP_013734516.1	1e-139	LOB domain-containing protein 15
Swissprot	Q8L5T5	1e-105	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A078F3M7	1e-138	A0A078F3M7_BRANA; BnaA03g19070D protein
TrEMBL	A0A291LR01	1e-138	A0A291LR01_BRARR; Transcription factor LBD15b
TrEMBL	A0A397ZYI0	1e-138	A0A397ZYI0_BRACM; Uncharacterized protein
TrEMBL	A0A3P5ZJJ8	1e-138	A0A3P5ZJJ8_BRACM; Uncharacterized protein
TrEMBL	M4C7L0	1e-138	M4C7L0_BRARP; Uncharacterized protein
STRING	Bra000188.1-P	1e-139	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-103	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]