PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009133360.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

FAR1

Protein Properties

Length: 767aa MW: 88405.5 Da PI: 6.4809

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009133360.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	98.3	8.4e-31	62	154	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 fYn+YA+++GFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk+++ +gkw v+ +++eHnHel+p XP_009133360.1 62 FYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRtkDREIKRPRTITRVGCKASLSVKMHDsSGKWAVSGFVKEHNHELVP 154 9*************************************999888555667889*************99***************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.4E-29	62	154	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.5E-33	277	369	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.423	545	593	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.0E-10	545	591	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.7E-7	568	595	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 767 aa Download sequence Send to blast
MDNEEVLDFD VDDDGIDIEP NDAIDMLDDT TNSSDAATYF PDGDLEPYEG LEFESEESAK 60 AFYNSYARRI GFSTRVSSSR RSRRDGAIIQ RQFVCAKEGF RNMNEKRTKD REIKRPRTIT 120 RVGCKASLSV KMHDSSGKWA VSGFVKEHNH ELVPPDQVHC LRSHRQISGP AKTLIDTLQA 180 AGMGPRRIMS ALIKEYGGIS RVGFTEVDCR NYMRNNRQKS IQGEIQLLLD YLRQMNADNP 240 SFFYSVEDDH HHHESVGNVF WADPKAITDF TYFGDTVTFD TTYRSNRYRL PFAPFTGVNH 300 HGQPILFGCA FIVNENEASF VWLFKTWLSA MSGRSPVSIT TDHDAVIRAA VMQVFPEARH 360 RFCKWHIFKK CQEKLSHVFL RHPSFESDLH KSVNVTDSVE DFESCWFSLL DKYELRDHDW 420 LQALYSDRRQ WVPVYLRDTF FAEMSSTQRS DSINSYFDGY INASTNLSQF FKLYEKALES 480 RLEKEVKADY DTMNSPPVLK TPSPMEKQAS ELYTRKLFTR FQEELVGTLT FMASKADDDG 540 DLGTYQVAKY GETHKAHCVK FNILEMRANC SCQMFEFSGI VCRHILAVFR VTNLLTLPPY 600 YILKRWTRNA KSSVIFDDYG LHAYDNYLES HTVRYNTLRH KAFSFVQEAG KSLYTCDVAL 660 VALQEAAKTV SLEMKNEVRR TMANGHVKGN SASGGEQILR NEDSQQDEPE DEMDKKIIEL 720 RNELELANRR CEAYRTNLLS VLKEMEDQKL QVSIKVQNIK ISLKDSL

Sequence ? help Back to Top

Protein Sequence Length: 767 aa Download sequence Send to blast

MDNEEVLDFD VDDDGIDIEP NDAIDMLDDT TNSSDAATYF PDGDLEPYEG LEFESEESAK  60
AFYNSYARRI GFSTRVSSSR RSRRDGAIIQ RQFVCAKEGF RNMNEKRTKD REIKRPRTIT  120
RVGCKASLSV KMHDSSGKWA VSGFVKEHNH ELVPPDQVHC LRSHRQISGP AKTLIDTLQA  180
AGMGPRRIMS ALIKEYGGIS RVGFTEVDCR NYMRNNRQKS IQGEIQLLLD YLRQMNADNP  240
SFFYSVEDDH HHHESVGNVF WADPKAITDF TYFGDTVTFD TTYRSNRYRL PFAPFTGVNH  300
HGQPILFGCA FIVNENEASF VWLFKTWLSA MSGRSPVSIT TDHDAVIRAA VMQVFPEARH  360
RFCKWHIFKK CQEKLSHVFL RHPSFESDLH KSVNVTDSVE DFESCWFSLL DKYELRDHDW  420
LQALYSDRRQ WVPVYLRDTF FAEMSSTQRS DSINSYFDGY INASTNLSQF FKLYEKALES  480
RLEKEVKADY DTMNSPPVLK TPSPMEKQAS ELYTRKLFTR FQEELVGTLT FMASKADDDG  540
DLGTYQVAKY GETHKAHCVK FNILEMRANC SCQMFEFSGI VCRHILAVFR VTNLLTLPPY  600
YILKRWTRNA KSSVIFDDYG LHAYDNYLES HTVRYNTLRH KAFSFVQEAG KSLYTCDVAL  660
VALQEAAKTV SLEMKNEVRR TMANGHVKGN SASGGEQILR NEDSQQDEPE DEMDKKIIEL  720
RNELELANRR CEAYRTNLLS VLKEMEDQKL QVSIKVQNIK ISLKDSL

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009133360.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009133360.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Refseq	XP_018513436.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A397ZWL4	0.0	A0A397ZWL4_BRACM; Uncharacterized protein
STRING	Bo3g034290.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]