PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133198.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 673aa    MW: 75551.7 Da    PI: 6.8745
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133198.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS375.37.7e-1152996681374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+av+++d ++a +lL++++++++p gd +qRla++f+++L+arla+++s++yk + +++ s    + +l+a++lf  ++P+ k+s+
  XP_009133198.1 299 LRSLLIHCAQAVAADDSRCAGQLLKQIRQHSTPFGDGNQRLAHCFANGLEARLAGTGSQIYKGIVSKPRS---AAAVLKAHQLFLACCPFRKLSY 390
                     689***************************************************************9999...999******************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +++N++I + v ++ rvH+iDf+i +G+QWp+L++ ++    g+p++R+Tg++ p++g   ++++eetgerLa +Ae++gvpfe+++ +ak++++
  XP_009133198.1 391 FITNKTIRDLVGNSPRVHVIDFGILYGFQWPTLIHRFSI--YGKPKVRVTGIEFPQPGfrPTQRVEETGERLAAYAEQFGVPFEYKA-IAKKWDA 482
                     **************************************8..8***************9*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++le+L+++++E ++Vn+ ++ ++l+desv++es+rd+vL+l+ +++P+++v+   +  +n++ F++rf eal ++s++fd+le+ +pre+eer+
  XP_009133198.1 483 VQLEDLDIDRDEITVVNCLYRAENLHDESVKVESCRDAVLSLIGKINPDLFVFGIVNGAYNAPFFVTRFREALFHFSSIFDMLETIVPREDEERM 577
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++E e++gre+ nv+aceg er+er et+++W+ r +++G+ +vp++ +++k+  + +++++ + + +++++ +l++gWk+r+++++S+W+
  XP_009133198.1 578 FLEMEVFGREALNVIACEGWERVERPETYKQWHVRAMRSGLVQVPFDPDIMKTSLRKVNTFYHKDFVIDQDNRWLLQGWKGRTVMALSVWK 668
                     **************************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.441273648IPR005202Transcription factor GRAS
PfamPF035142.7E-112299668IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MITDPAPVDR PRLPDQPSSL TLFDGYNYSH GLSNNQNAFV TSAAGEEEDP ADEFDFSDAV  60
LGYISQILME EDMDDRVCML QESLDLVAAE RSLYEAIGKK YPPSPERSSP YVENLDHVVP  120
AGDRNGSGGG FMSGGMKPMS GGGFTLDFRN PQSRCSPVLS VPQSPYGVHE SSNASREDQS  180
VWLFRRGVEE GSERNEMIVN FREDSRSKGR RNPNSGEEER CSKLPAVFSE TILRSDVVDK  240
ILVHVPGGES MKEFDALREV LKKGVGKKKA SAPQEGKRRA RGRGRGRGGG GVKKEVVDLR  300
SLLIHCAQAV AADDSRCAGQ LLKQIRQHST PFGDGNQRLA HCFANGLEAR LAGTGSQIYK  360
GIVSKPRSAA AVLKAHQLFL ACCPFRKLSY FITNKTIRDL VGNSPRVHVI DFGILYGFQW  420
PTLIHRFSIY GKPKVRVTGI EFPQPGFRPT QRVEETGERL AAYAEQFGVP FEYKAIAKKW  480
DAVQLEDLDI DRDEITVVNC LYRAENLHDE SVKVESCRDA VLSLIGKINP DLFVFGIVNG  540
AYNAPFFVTR FREALFHFSS IFDMLETIVP REDEERMFLE MEVFGREALN VIACEGWERV  600
ERPETYKQWH VRAMRSGLVQ VPFDPDIMKT SLRKVNTFYH KDFVIDQDNR WLLQGWKGRT  660
VMALSVWKPE SKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-4430567125382Protein SCARECROW
5b3h_A5e-4430567124381Protein SCARECROW
5b3h_D5e-4430567124381Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278287RARGRGRGRG
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009133198.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0046840.0AC004684.3 Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133198.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLM4C7340.0M4C734_BRARP; Uncharacterized protein
STRINGBra000012.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein