PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009133189.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 305aa    MW: 34932.3 Da    PI: 6.8343
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009133189.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.3e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd  l+ +++++G+g +W + ++++g +R++k+c++rw++yl
   XP_009133189.1 14 KGPWSPEEDAMLKSYIEKHGTGnNWIALPHKIGIKRCGKSCRLRWLNYL 62
                     79*******************************55************97 PP
2Myb_DNA-binding36.61e-1169111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
   XP_009133189.1  69 GGFTDEEDYIICSLYITIGSR-WSIIASQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.004962IPR017930Myb domain
SMARTSM007173.6E-131364IPR001005SANT/Myb domain
SuperFamilySSF466891.71E-2613109IPR009057Homeodomain-like
PfamPF002492.3E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-241569IPR009057Homeodomain-like
CDDcd001671.65E-91662No hitNo description
PROSITE profilePS5129419.88763117IPR017930Myb domain
SMARTSM007171.2E-1067115IPR001005SANT/Myb domain
PfamPF002494.4E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-2370117IPR009057Homeodomain-like
CDDcd001676.13E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGRAPCCDKT VVKKGPWSPE EDAMLKSYIE KHGTGNNWIA LPHKIGIKRC GKSCRLRWLN  60
YLRPNLKHGG FTDEEDYIIC SLYITIGSRW SIIASQLPGR TDNDIKNYWN TRLKKKLLSK  120
QGKAIHQQLS LRLEPETTSK RSSFGQNQIL MFHDENAKPP LNQTIHSKMV DPSITSFAME  180
EKRMVPVLES YSWEQNKVWL DIDHDAASSS YHHHASPHFN SMTSSSSSIG TNSPLQMSHY  240
TINDNNQGDQ EMFFMAGFEN LQDELFDEII NNITTEFEFR GTETLNNNCL GHEINSFVDC  300
PLKDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141177108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, internodes, shoot tips and flowers. {ECO:0000269|PubMed:16461581}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions as regulator of genes affecting cell wall organization and remodeling. Activates genes related to the primary cell wall and represses genes related to the secondary cell wall and expansins. Required for the regulation of longitudinal cell growth in stems, leaves, petioles, roots, flowers and siliques. {ECO:0000269|PubMed:24563287}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009133189.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891830.0AC189183.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB001A20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133189.10.0PREDICTED: transcription factor RAX3 isoform X1
RefseqXP_013728805.10.0transcription factor MYB87-like isoform X1
RefseqXP_022568754.10.0transcription factor MYB87-like isoform X1
SwissprotF4JSU01e-154MYB87_ARATH; Transcription factor MYB87
TrEMBLA0A3P5Z1040.0A0A3P5Z104_BRACM; Uncharacterized protein
TrEMBLM4D5M80.0M4D5M8_BRARP; Uncharacterized protein
STRINGBra011785.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.11e-139myb domain protein 87
Publications ? help Back to Top
  1. Fujiwara S, et al.
    Chimeric repressor analysis identifies MYB87 as a possible regulator of morphogenesis via cell wall organization and remodeling in Arabidopsis.
    Biotechnol. Lett., 2014. 36(5): p. 1049-57
    [PMID:24563287]